Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Regulator
Locus tag   DG474_RS08400 Genome accession   NZ_CP029257
Coordinates   1756913..1757536 (-) Length   207 a.a.
NCBI ID   WP_255778076.1    Uniprot ID   -
Organism   Streptococcus oralis strain CCUG 53468     
Function   fratricide immunity (predicted from homology)   
Competence regulation

Genomic Context

Location: 1751913..1762536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG474_RS08370 (DG474_08510) - 1751931..1752125 (-) 195 WP_255778072.1 PspC domain-containing protein -
  DG474_RS08375 (DG474_08515) recA 1752295..1753446 (-) 1152 WP_255778073.1 recombinase RecA Machinery gene
  DG474_RS08380 (DG474_08520) cinA 1753501..1754757 (-) 1257 WP_255778074.1 competence/damage-inducible protein A Machinery gene
  DG474_RS08385 (DG474_08525) - 1754830..1755870 (-) 1041 WP_000592174.1 LCP family protein -
  DG474_RS08390 (DG474_08530) - 1755875..1756396 (-) 522 WP_084883435.1 GNAT family N-acetyltransferase -
  DG474_RS08395 (DG474_08535) tsaE 1756386..1756829 (-) 444 WP_255778075.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DG474_RS08400 (DG474_08540) comM 1756913..1757536 (-) 624 WP_255778076.1 hypothetical protein Regulator
  DG474_RS08405 (DG474_08545) ndk 1757671..1758090 (-) 420 WP_000438280.1 nucleoside-diphosphate kinase -
  DG474_RS08410 (DG474_08550) rpoC 1758201..1761866 (-) 3666 WP_255778079.1 DNA-directed RNA polymerase subunit beta' -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23763.80 Da        Isoelectric Point: 9.5054

>NTDB_id=291440 DG474_RS08400 WP_255778076.1 1756913..1757536(-) (comM) [Streptococcus oralis strain CCUG 53468]
MVKSIRLLLLIAVVQISFSSCLLWKETFLSLKQTNAYFLILIVGISVLCAGINYFHTADQSRHSILHVQKKVSLVYCLLL
VVNLLATCLVLSESIQTTSKLQQELVDLFLPSFFFLLGVDLLIFLPFDKIFRDIENRLNKKKTVVISVLATMVFLRNPLV
ISSIFLYIIVGFLCARFLFPKCIQREISFYGHLIRDILFVFSIVVFF

Nucleotide


Download         Length: 624 bp        

>NTDB_id=291440 DG474_RS08400 WP_255778076.1 1756913..1757536(-) (comM) [Streptococcus oralis strain CCUG 53468]
ATGGTAAAATCAATTCGCCTATTGTTACTGATTGCAGTCGTCCAGATTAGTTTTAGTAGTTGTCTATTATGGAAAGAAAC
CTTTTTATCTTTAAAACAGACCAATGCTTATTTTTTGATTTTGATAGTAGGGATTTCTGTTCTTTGTGCTGGGATAAATT
ATTTCCATACAGCAGACCAGTCTAGACATAGTATTTTACATGTTCAAAAGAAAGTGAGTCTTGTTTATTGCCTCCTTTTA
GTAGTCAATCTTCTGGCAACCTGTCTGGTTCTCTCAGAAAGCATCCAAACCACTAGCAAATTGCAGCAGGAATTGGTTGA
CCTCTTTTTACCCTCCTTCTTTTTCTTGCTAGGAGTAGATCTATTGATTTTCTTACCTTTTGATAAAATTTTTCGCGATA
TAGAAAATCGCCTAAATAAAAAGAAAACAGTCGTCATTTCCGTTCTAGCTACGATGGTTTTCTTGAGGAATCCCTTAGTG
ATTTCCTCGATTTTCCTTTATATCATTGTCGGTTTTCTATGCGCACGTTTCCTTTTTCCAAAATGTATTCAAAGGGAAAT
CTCCTTTTATGGACACCTGATTCGGGATATCCTGTTTGTTTTTTCAATAGTTGTATTCTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Streptococcus pneumoniae D39

50.485

99.517

0.502
  comM Streptococcus pneumoniae R6

50.485

99.517

0.502
  comM Streptococcus pneumoniae TIGR4

50.485

99.517

0.502
  comM Streptococcus mitis NCTC 12261

40.609

95.169

0.386
  comM Streptococcus mitis SK321

40.609

95.169

0.386

Multiple sequence alignment