Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   AYP36_RS11680 Genome accession   NZ_CP034808
Coordinates   2459942..2460706 (-) Length   254 a.a.
NCBI ID   WP_001136210.1    Uniprot ID   Q8X5U1
Organism   Escherichia coli strain 08-3914     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2454942..2465706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYP36_RS11650 - 2455576..2456934 (-) 1359 WP_001302220.1 PTS galactitol transporter subunit IIC -
  AYP36_RS11655 - 2457011..2457292 (-) 282 WP_000084025.1 PTS sugar transporter subunit IIB -
  AYP36_RS11660 - 2457289..2457762 (-) 474 WP_001161553.1 PTS sugar transporter subunit IIA -
  AYP36_RS11665 - 2457787..2458533 (-) 747 WP_001301676.1 GntR family transcriptional regulator -
  AYP36_RS11670 nikR 2458732..2459133 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  AYP36_RS11675 nikE 2459139..2459945 (-) 807 WP_000173697.1 nickel import ATP-binding protein NikE -
  AYP36_RS11680 amiE 2459942..2460706 (-) 765 WP_001136210.1 nickel import ATP-binding protein NikD Regulator
  AYP36_RS11685 nikC 2460706..2461539 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  AYP36_RS11690 nikB 2461536..2462480 (-) 945 WP_000947083.1 nickel ABC transporter permease subunit NikB -
  AYP36_RS11695 nikA 2462480..2464054 (-) 1575 WP_000953364.1 nickel ABC transporter substrate-binding protein -
  AYP36_RS11700 acpT 2464165..2464752 (-) 588 WP_000285784.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26790.39 Da        Isoelectric Point: 6.5997

>NTDB_id=291397 AYP36_RS11680 WP_001136210.1 2459942..2460706(-) (amiE) [Escherichia coli strain 08-3914]
MPQQIELRNIALQAAQPLVHGVSLTLKRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSDGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=291397 AYP36_RS11680 WP_001136210.1 2459942..2460706(-) (amiE) [Escherichia coli strain 08-3914]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTGTCGTTAACCCTGAA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCGACGCTGGGAATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCTCCCTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAGACGTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCACGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTTTGCGAATCACCG
TTTATCATCGCCGATGAACCAACCACCGACCTCGACGTGGTAGCACAGGCACGCATTCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAGGCGCCGGGGATGCTGCTGGTCACCCATGATATGGGCGTGGTGGCGCGTCTGGCGGATGACGTAGCGGTAA
TGTCTGACGGTAAGATTGTCGAACAGGGCGATGTCGAAACGCTGTTTAACGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8X5U1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398

Multiple sequence alignment