Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   DEH84_RS10890 Genome accession   NZ_CP029210
Coordinates   2415501..2417021 (+) Length   506 a.a.
NCBI ID   WP_109036875.1    Uniprot ID   A0A2U8FSU3
Organism   Aquabacterium olei strain NBRC 110486     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2410501..2422021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH84_RS10870 (DEH84_10870) ffh 2411124..2412503 (-) 1380 WP_109036871.1 signal recognition particle protein -
  DEH84_RS10875 (DEH84_10875) ccsA 2412536..2413387 (+) 852 WP_109036872.1 cytochrome c biogenesis protein CcsA -
  DEH84_RS10880 (DEH84_10880) - 2413394..2413642 (+) 249 WP_109036873.1 PP0621 family protein -
  DEH84_RS10885 (DEH84_10885) - 2413654..2415504 (+) 1851 WP_109036874.1 ATP-binding protein -
  DEH84_RS10890 (DEH84_10890) pilR 2415501..2417021 (+) 1521 WP_109036875.1 sigma-54 dependent transcriptional regulator Regulator
  DEH84_RS10895 (DEH84_10895) ampD 2417008..2417607 (+) 600 WP_109036876.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  DEH84_RS10900 (DEH84_10900) - 2417942..2420800 (+) 2859 WP_245932776.1 ribonucleoside-diphosphate reductase subunit alpha -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54159.54 Da        Isoelectric Point: 5.9261

>NTDB_id=291240 DEH84_RS10890 WP_109036875.1 2415501..2417021(+) (pilR) [Aquabacterium olei strain NBRC 110486]
MSTASAHRLLVIDDEPDLRTLYELTLLREGYDVETADSVAQALQHLAEQRYSAVITDMRLPDGTGLDILEHLEQTGRQER
AIVITAYGSAENAVSALKAGAFDYLTKPVDLKQFRSVVASIVGLQGAVSTPPPVSASRPGASQAAPAANGGRSALQRLIG
VDRGLQQVRQLIDKVARSMAPVLISGESGTGKELVARAIHDTSTRAARPFIAVNCGAIPEHLLEAEFFGYRKGAFTGASE
DREGFFQAAAGGTLFLDELGDLPLAMQSKLLRAIQERAVRPVGATAEMPVDVRLLSATHKDLAAEVQAGRFRQDLYYRLN
VIQIRLPALRERREDLPGLCAGLLERLAREAGLSAVPQLSEAALRALEVHPFPGNVRELENLLHRATALSGHATIDAADL
GLDAPATAASSAAPTITEPAPASLATAPVPATPAALPTDLAAHLDQVERDILVRALEKHRLNRTAAGQSLGLSLRQMRYR
MARLGVQVNDHGIVLGEQFDPEHDPD

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=291240 DEH84_RS10890 WP_109036875.1 2415501..2417021(+) (pilR) [Aquabacterium olei strain NBRC 110486]
ATGAGCACTGCTTCCGCCCACCGCCTGCTGGTCATCGACGACGAGCCCGACCTGCGCACGCTCTACGAGCTCACGTTGCT
GCGGGAGGGCTACGACGTGGAGACGGCAGACAGCGTCGCGCAAGCACTGCAGCATCTGGCGGAGCAGCGCTACAGCGCGG
TCATCACCGACATGCGGCTGCCGGATGGCACCGGCCTCGACATCCTCGAGCACCTGGAGCAGACCGGCCGGCAGGAACGC
GCCATCGTCATCACGGCCTATGGATCGGCCGAGAACGCGGTGTCGGCGCTGAAGGCAGGCGCCTTCGACTACCTGACCAA
GCCGGTCGATCTGAAGCAGTTTCGCAGTGTGGTGGCCAGCATCGTGGGCCTGCAGGGCGCAGTCAGCACACCGCCCCCGG
TCAGCGCCAGTCGCCCCGGCGCATCACAGGCCGCCCCGGCCGCCAACGGCGGGCGCAGCGCACTGCAGCGGCTGATCGGC
GTCGACCGGGGCCTTCAGCAGGTACGCCAGCTCATCGACAAGGTCGCCCGCAGCATGGCGCCCGTGCTCATCAGCGGCGA
GTCGGGCACCGGCAAGGAGCTGGTGGCCCGCGCCATCCACGACACCAGCACCCGTGCGGCACGCCCCTTCATCGCGGTGA
ACTGCGGGGCCATCCCGGAGCACCTGCTCGAAGCCGAGTTCTTCGGTTACCGCAAGGGCGCCTTCACCGGGGCCAGCGAA
GACCGCGAGGGCTTCTTCCAGGCCGCAGCCGGAGGCACGCTCTTCCTGGACGAACTCGGTGACCTGCCGCTGGCCATGCA
ATCCAAACTGCTGCGCGCCATCCAGGAGCGCGCCGTGCGCCCCGTCGGCGCCACCGCCGAGATGCCGGTCGACGTGCGGC
TGCTGAGCGCCACGCACAAGGATCTGGCGGCCGAGGTGCAGGCAGGCCGCTTCCGGCAGGATCTGTATTACCGACTCAAT
GTGATCCAGATCCGCCTGCCCGCTCTGCGTGAGCGCCGCGAAGACCTGCCCGGCCTGTGCGCGGGTCTGCTCGAACGGCT
GGCCCGCGAGGCCGGCCTGAGCGCCGTGCCGCAACTGAGCGAGGCCGCCTTGCGCGCCCTGGAGGTCCACCCCTTCCCGG
GGAACGTGCGCGAGCTGGAGAACCTGCTGCACCGCGCCACGGCCCTGAGCGGCCACGCCACCATCGACGCCGCTGACCTC
GGGCTGGACGCCCCCGCCACGGCCGCCTCAAGCGCTGCGCCCACGATCACCGAGCCCGCACCGGCCTCGCTGGCGACCGC
CCCGGTGCCAGCCACGCCCGCAGCGCTGCCGACCGACCTGGCTGCACACCTCGATCAGGTCGAGCGCGACATCCTCGTGC
GCGCCCTGGAAAAGCATCGACTCAACCGCACGGCCGCCGGCCAGAGCCTCGGCCTGTCGCTGCGCCAGATGCGCTACCGC
ATGGCCCGCCTGGGCGTGCAGGTCAACGACCACGGCATCGTGCTGGGCGAACAGTTCGACCCCGAACATGATCCGGACTG
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-118)

Sigma-54 interaction domain (Sigma54_activat)

(158-324)

Bacterial regulatory protein, Fis family (HTH_8)

(444-483)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U8FSU3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

51.139

95.455

0.488
  pilR Acinetobacter baumannii strain A118

41.962

94.664

0.397

Multiple sequence alignment