Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   DEH83_RS02495 Genome accession   NZ_CP029207
Coordinates   510482..512440 (-) Length   652 a.a.
NCBI ID   WP_006270051.1    Uniprot ID   A0AAD2SVG1
Organism   Streptococcus constellatus strain TCV107     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 505482..517440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS02460 (DEH83_02440) - 506717..507082 (-) 366 WP_003025907.1 Asp23/Gls24 family envelope stress response protein -
  DEH83_RS02465 (DEH83_02445) rpmB 507276..507464 (-) 189 WP_003025909.1 50S ribosomal protein L28 -
  DEH83_RS02470 (DEH83_02450) - 507599..508261 (-) 663 WP_255776969.1 cell wall-active antibiotics response protein -
  DEH83_RS02475 (DEH83_02455) - 508267..508713 (-) 447 WP_003025913.1 LytTR family DNA-binding domain-containing protein -
  DEH83_RS02485 (DEH83_02465) - 509145..510026 (-) 882 WP_003070319.1 class II fructose-bisphosphate aldolase -
  DEH83_RS02495 (DEH83_02475) amiA 510482..512440 (-) 1959 WP_006270051.1 peptide ABC transporter substrate-binding protein Regulator
  DEH83_RS02500 (DEH83_02480) mraY 512835..513818 (-) 984 WP_048800364.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  DEH83_RS02505 (DEH83_02485) pbp2X 513820..516078 (-) 2259 WP_255776970.1 penicillin-binding protein PBP2X -
  DEH83_RS02510 (DEH83_02490) ftsL 516082..516399 (-) 318 WP_003070323.1 cell division protein FtsL -
  DEH83_RS02515 (DEH83_02495) rsmH 516408..517358 (-) 951 WP_255776971.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72482.63 Da        Isoelectric Point: 8.2688

>NTDB_id=291168 DEH83_RS02495 WP_006270051.1 510482..512440(-) (amiA) [Streptococcus constellatus strain TCV107]
MKSSKWIIATGVVLSTGILLAGCGKSTSNTSTYSYVYTQDPDTLNYLMANRATTSDVVTNLVDGLLENDRYGNLVPALAK
SWTVSKDGLTYTYKLRKDAKWYTSEGEEYAGVKAQDFVTGLKYAADNKSEALYLVQDSVKGLDAYIKGETKDFSTVGVKA
VDDYTVQYTLSRTEPYWNSKTTNNILFPVNSDFLKSQGKNFGSVKPSSILYNGPYLLKSLTAKSSMEFAKNPHYYDKKNV
HLDNIKLTYYDGSDQEALIRNFTDGAYSAARLYPNSSSFASVKKQYANNIIYSLQDATSYYYNFNLNRQSYNHTSKKTDA
QKSSTQEAVLNKAFRQAINFAYNRTSYGAQSNGKDGAAKVLRNTLVPPTFVSIGDKTFGDVVSSKLVNYGSEWSNMNLTD
AQDAYYNPEKAKAKFAQAKAELQAKGVQFPIHLDVPADQTSKIGVQWESSMKQSVESVLGADNVVIDIQQMSSDELNNIS
YFANTAAQKDYDLYNGGWSGDYQDPSTYLDTLNTKNGGSLQNFGLEPGQENAKIKAVGLDTYTTMLEEANAETNETKRYE
KYAEAQAWLIDSALTMPNLSLGGTPSVTKTVPFSRSYSLVGIKGGSSNYFKYVKLQDKIVTTKEYESAKKKWLKEKEASN
QKAQDDYENHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=291168 DEH83_RS02495 WP_006270051.1 510482..512440(-) (amiA) [Streptococcus constellatus strain TCV107]
ATGAAATCATCAAAATGGATTATTGCAACAGGAGTTGTGCTAAGCACTGGAATCTTATTAGCAGGTTGTGGCAAGTCAAC
TTCTAATACGTCAACATACTCATATGTGTATACACAAGATCCAGACACGTTGAATTATCTGATGGCTAATCGTGCGACAA
CTTCAGATGTTGTGACCAATTTAGTTGATGGATTATTAGAAAATGACCGATACGGAAACTTAGTTCCAGCACTCGCTAAG
TCATGGACAGTCTCCAAAGATGGTTTGACCTATACCTATAAATTACGTAAAGACGCAAAATGGTACACATCAGAAGGTGA
AGAGTACGCAGGTGTAAAAGCACAAGACTTTGTGACAGGTTTGAAATATGCTGCAGATAATAAATCTGAAGCCCTTTACC
TTGTGCAAGATTCTGTCAAAGGATTAGATGCGTATATCAAAGGGGAGACAAAAGATTTTTCAACAGTTGGTGTGAAAGCT
GTAGATGATTATACAGTACAGTATACTTTAAGTCGTACGGAACCTTATTGGAATTCAAAAACAACTAATAATATTCTCTT
TCCAGTGAATTCGGACTTTTTGAAATCACAAGGAAAGAATTTTGGTTCTGTGAAACCGAGTAGCATTCTTTACAACGGTC
CATATCTGCTGAAGTCTTTGACGGCTAAATCCTCTATGGAATTTGCTAAAAATCCTCATTACTATGATAAAAAGAATGTT
CACTTGGACAATATCAAATTGACTTATTATGATGGATCAGACCAAGAAGCGCTTATCCGAAACTTCACAGATGGCGCCTA
TAGTGCGGCTCGTCTCTATCCAAATAGTTCAAGTTTTGCTTCTGTCAAGAAACAATATGCCAACAATATCATCTATAGTT
TACAAGATGCAACTAGTTATTATTACAATTTTAACTTAAATCGTCAGTCTTACAATCACACATCTAAGAAAACAGATGCT
CAAAAATCTTCAACGCAAGAAGCGGTACTAAACAAAGCCTTTCGTCAAGCTATCAACTTTGCTTATAACCGCACTTCTTA
CGGTGCACAAAGTAATGGGAAAGATGGTGCAGCAAAGGTGTTGCGGAACACGCTCGTGCCACCAACATTTGTTTCCATTG
GAGATAAGACTTTTGGCGATGTGGTATCCTCTAAGTTAGTAAATTATGGTTCAGAATGGTCTAATATGAATCTGACTGAT
GCGCAAGATGCTTACTACAATCCAGAAAAAGCAAAAGCTAAATTTGCTCAGGCAAAAGCAGAATTGCAAGCCAAAGGTGT
TCAATTTCCCATTCACTTAGACGTACCAGCTGATCAAACTAGTAAAATCGGTGTTCAGTGGGAAAGTTCTATGAAACAAT
CTGTTGAGTCTGTCTTAGGAGCCGATAATGTTGTGATTGATATTCAGCAGATGAGCTCAGATGAACTGAACAATATCAGT
TATTTTGCCAATACTGCCGCTCAAAAAGATTATGATTTGTACAATGGCGGTTGGTCAGGAGACTATCAAGACCCATCCAC
TTATCTAGATACCTTGAATACTAAAAATGGTGGTAGTTTGCAGAACTTTGGCTTAGAACCAGGTCAAGAGAATGCTAAGA
TAAAGGCTGTTGGTTTGGATACCTATACTACAATGCTTGAGGAAGCAAATGCTGAAACCAATGAGACGAAGCGTTATGAA
AAATATGCTGAAGCACAAGCGTGGTTGATTGATAGTGCTTTGACAATGCCCAATCTCTCTCTTGGAGGGACGCCGTCTGT
GACAAAGACTGTTCCGTTTAGTCGTTCGTATTCTCTGGTAGGGATTAAAGGCGGTTCAAGTAACTACTTTAAATATGTTA
AATTACAAGATAAAATTGTGACGACTAAAGAATACGAAAGTGCTAAAAAGAAATGGCTGAAAGAAAAAGAAGCGTCTAAT
CAAAAAGCACAAGATGATTATGAAAATCATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

58.295

100

0.587
  amiA3 Streptococcus thermophilus LMD-9

57.534

100

0.58
  amiA3 Streptococcus thermophilus LMG 18311

57.382

100

0.578

Multiple sequence alignment