Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   AYP37_RS15525 Genome accession   NZ_CP034797
Coordinates   2891325..2891915 (-) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain 08-3918     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2886325..2896915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYP37_RS15510 uhpT 2886965..2888356 (-) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -
  AYP37_RS15515 uhpC 2888494..2889813 (-) 1320 WP_001301991.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  AYP37_RS15520 uhpB 2889823..2891325 (-) 1503 WP_001303725.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  AYP37_RS15525 letA 2891325..2891915 (-) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  AYP37_RS15530 - 2892077..2893180 (-) 1104 WP_001089794.1 hypothetical protein -
  AYP37_RS15535 - 2893788..2894270 (-) 483 WP_000229982.1 hypothetical protein -
  AYP37_RS15540 - 2894418..2895071 (-) 654 WP_000168034.1 hypothetical protein -
  AYP37_RS15545 ilvN 2895334..2895624 (-) 291 WP_001181706.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=291005 AYP37_RS15525 WP_000633668.1 2891325..2891915(-) (letA) [Escherichia coli strain 08-3918]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=291005 AYP37_RS15525 WP_000633668.1 2891325..2891915(-) (letA) [Escherichia coli strain 08-3918]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGTTGCTGGGGCTGGAACCTGATTT
GCAAGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACAATTATGCTCTCCGTT
CATGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCGCGTGGCTTTCTCTCCAAGCGTTGTAGCCCTGACGA
ACTGATTGCTGCGGTGCATACGGTTGCCACAGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GCCAGGACCCACTAACCAAACGTGAACGGCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTTGA
ACTGGCGCGCCGTATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378