Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DD562_RS08980 Genome accession   NZ_CP029172
Coordinates   1772103..1772726 (-) Length   207 a.a.
NCBI ID   WP_234418051.1    Uniprot ID   -
Organism   Staphylococcus aureus strain PTDrAP2     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1767103..1777726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DD562_RS08960 (DD562_08960) rpsT 1768017..1768268 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  DD562_RS08965 (DD562_08965) holA 1768313..1769287 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  DD562_RS08970 (DD562_08970) comEC 1769344..1771545 (-) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DD562_RS08975 (DD562_08975) - 1771550..1772011 (-) 462 WP_000439690.1 ComE operon protein 2 -
  DD562_RS08980 (DD562_08980) comEA 1772103..1772726 (-) 624 WP_234418051.1 ComEA family DNA-binding protein Machinery gene
  DD562_RS08985 (DD562_08985) - 1772829..1773545 (-) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  DD562_RS08990 (DD562_08990) rsfS 1773548..1773901 (-) 354 WP_001088020.1 ribosome silencing factor -
  DD562_RS08995 (DD562_08995) yqeK 1773902..1774486 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DD562_RS09000 (DD562_09000) nadD 1774476..1775045 (-) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  DD562_RS09005 (DD562_09005) yhbY 1775048..1775338 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  DD562_RS09010 (DD562_09010) aroE 1775342..1776148 (-) 807 WP_000666746.1 shikimate dehydrogenase -
  DD562_RS09015 (DD562_09015) yqeH 1776162..1777262 (-) 1101 WP_109028236.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23037.07 Da        Isoelectric Point: 8.3422

>NTDB_id=290927 DD562_RS08980 WP_234418051.1 1772103..1772726(-) (comEA) [Staphylococcus aureus strain PTDrAP2]
MISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSKNKGPVYVDIKGAVKHPNVYKM
TSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKNGNTNNTKVNLNTASVSELMSV
PGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 624 bp        

>NTDB_id=290927 DD562_RS08980 WP_234418051.1 1772103..1772726(-) (comEA) [Staphylococcus aureus strain PTDrAP2]
ATTATAAGTGCTGTTGTTTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTT
TGAAAATAAAGATACTGCTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAG
ATGGAGATGATTCCAAAAATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATG
ACATCTAAGGATAGAGTAGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTC
TGAAAAATTAACAGATCAAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACA
GTGTGCACGTAAAAAATGGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTT
CCTGGAGTAGGGCAAGCTAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTT
GAAAAAAGTAAAAGGTTTTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(143-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

95.631

99.517

0.952
  comEA Staphylococcus aureus N315

95.631

99.517

0.952

Multiple sequence alignment