Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SGO_RS08410 Genome accession   NC_009785
Coordinates   1782256..1784217 (-) Length   653 a.a.
NCBI ID   WP_012130761.1    Uniprot ID   A8AYX8
Organism   Streptococcus gordonii str. Challis substr. CH1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1777256..1789217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGO_RS08400 (SGO_1713) amiA 1777848..1779830 (-) 1983 WP_012130758.1 peptide ABC transporter substrate-binding protein Regulator
  SGO_RS08405 (SGO_1715) amiA 1780081..1782039 (-) 1959 WP_012130760.1 peptide ABC transporter substrate-binding protein Regulator
  SGO_RS08410 (SGO_1716) amiA 1782256..1784217 (-) 1962 WP_012130761.1 peptide ABC transporter substrate-binding protein Regulator
  SGO_RS08415 (SGO_1717) pbp3 1784507..1785745 (+) 1239 WP_012130762.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  SGO_RS08420 (SGO_1718) sufB 1785953..1787365 (-) 1413 WP_012130763.1 Fe-S cluster assembly protein SufB -
  SGO_RS08425 (SGO_1719) sufU 1787383..1787820 (-) 438 WP_012130764.1 Fe-S cluster assembly sulfur transfer protein SufU -
  SGO_RS08430 (SGO_1720) - 1787807..1789039 (-) 1233 WP_012130765.1 cysteine desulfurase -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72642.79 Da        Isoelectric Point: 4.9229

>NTDB_id=29092 SGO_RS08410 WP_012130761.1 1782256..1784217(-) (amiA) [Streptococcus gordonii str. Challis substr. CH1]
MKPVKKLAVLGLTLASVFTLAACGNSNSGASKTYSYVYSTDPDTLDYTNTNRATTSDVIANLVDGLLENDRYGNLVPSLA
EDWTVSKDGLTYTYKLRKGAKWYTSEGEEYAEVKAQDFVTGLKHAADSNSDALPIVQSSIKGLDAYVKGESKDFSTVGVK
AIDDYTIQYTLNQPESYWNSKTTMGILFPINEEFLKSSGKDFGTVKPSGILYNGPYFLKSFTSKSSIEYTKNDNYWDKNN
VKISDVKLTYFDGSDQEALVRNFKDGTYTQARLYPNSSSYASVQKQYKDNIVYSPQDATTFFYAFNYNRKAYNFTAKTTD
AQKTSTTAALLNKDFRQAINFAFNRTAYGAQQNGQEGATSSLRNSLVPPTFVQIGEKNFGDIVKEDLASYGDEWKGVKLD
DAQDGLFNVEKAKAEFAKAKDALQAQGVEFPIHLDLPVDQTNNLLVQQANSFKQSVEEALGKDNVVIDVQQMSTENKNNV
TYFAETAAQKDYDINIAGWGPDFQDPSTYLNIFDPDKGDMLQNIGLEKGQNADLADKLGLNEFKKLNEEADSEKQDTTAR
YTKYAAAQAWLTDSSLVIPIQSNGGTPLVMKAVPFTKPYSLVGIKGDAYVFKYREVQNDIVTAKDYKAAEKKWKKEKEKT
NAKAQEELADHVK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=29092 SGO_RS08410 WP_012130761.1 1782256..1784217(-) (amiA) [Streptococcus gordonii str. Challis substr. CH1]
ATGAAACCAGTGAAAAAATTAGCTGTTTTAGGGCTTACGCTTGCTTCTGTTTTTACCTTAGCAGCATGTGGAAATTCTAA
CTCAGGGGCTTCAAAAACTTATTCTTATGTCTATTCAACAGACCCAGATACCTTGGATTATACAAATACTAATCGTGCAA
CTACGTCTGATGTTATTGCAAACTTAGTGGATGGACTATTAGAAAATGATAGATACGGAAATCTTGTGCCATCTCTGGCA
GAAGATTGGACAGTGTCGAAAGATGGTTTGACTTATACATATAAGCTTCGGAAGGGTGCTAAATGGTATACTTCTGAGGG
TGAAGAATATGCAGAAGTCAAAGCGCAGGACTTTGTTACTGGTTTGAAGCACGCGGCTGACAGCAATTCAGATGCGTTGC
CGATTGTTCAAAGCTCTATCAAAGGTTTGGATGCTTATGTAAAAGGTGAAAGTAAGGATTTCTCAACAGTTGGAGTTAAG
GCGATTGACGATTATACAATCCAATATACACTCAATCAGCCAGAAAGTTATTGGAATTCTAAAACCACAATGGGTATTCT
TTTCCCAATTAACGAAGAATTTTTAAAATCATCTGGTAAAGATTTCGGTACTGTAAAACCTTCAGGAATTCTCTATAACG
GTCCATATTTCCTGAAGTCCTTCACATCTAAATCATCTATTGAATATACAAAAAATGACAACTATTGGGATAAGAACAAT
GTGAAGATTTCAGACGTCAAGTTGACTTACTTTGATGGTTCTGATCAAGAAGCGCTTGTTCGTAACTTTAAAGATGGTAC
ATACACACAAGCTCGTTTGTATCCAAATAGTTCAAGTTATGCTTCAGTACAAAAACAATACAAAGATAATATTGTATACT
CTCCTCAAGATGCAACGACATTCTTCTATGCCTTTAACTACAACCGTAAAGCCTACAATTTCACAGCCAAGACAACAGAT
GCTCAAAAGACATCTACAACAGCTGCTCTCTTAAACAAAGATTTCCGTCAGGCAATCAACTTCGCTTTCAATCGGACGGC
TTATGGAGCGCAGCAAAACGGTCAAGAGGGGGCAACTAGCTCACTTAGAAACAGCTTGGTGCCGCCAACATTCGTTCAGA
TTGGCGAAAAGAACTTCGGAGACATCGTTAAAGAAGATTTGGCGAGCTATGGTGATGAGTGGAAGGGTGTCAAATTAGAC
GATGCTCAAGATGGACTCTTTAATGTTGAAAAAGCTAAGGCAGAATTTGCCAAAGCAAAAGATGCTCTCCAAGCACAAGG
TGTTGAATTCCCGATTCACTTAGATCTTCCTGTTGATCAAACAAACAACCTCTTGGTACAACAGGCTAATTCATTTAAAC
AATCAGTTGAAGAAGCCCTTGGTAAAGATAATGTTGTTATTGATGTACAGCAAATGTCTACAGAAAATAAAAATAATGTA
ACGTACTTTGCGGAGACTGCGGCTCAAAAAGACTACGATATCAACATTGCTGGTTGGGGTCCTGACTTCCAAGATCCATC
AACTTATTTGAATATTTTTGATCCAGATAAAGGAGATATGCTCCAAAATATCGGTTTGGAAAAAGGACAAAATGCTGATT
TAGCAGACAAACTGGGCTTGAACGAATTTAAGAAATTAAATGAAGAGGCAGATTCTGAAAAACAAGATACAACTGCTCGC
TATACAAAATATGCAGCAGCTCAAGCTTGGTTAACAGATAGCTCTTTGGTCATTCCGATTCAATCAAACGGTGGTACTCC
GCTTGTTATGAAGGCAGTTCCGTTCACAAAACCTTACTCTCTGGTTGGTATCAAAGGTGATGCTTACGTCTTTAAGTACA
GAGAAGTTCAAAATGACATTGTAACGGCGAAAGACTACAAAGCCGCTGAGAAAAAATGGAAGAAAGAAAAAGAAAAAACA
AATGCCAAAGCTCAAGAAGAATTGGCTGATCATGTTAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8AYX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.382

100

0.577
  amiA3 Streptococcus thermophilus LMG 18311

56.753

100

0.573
  amiA3 Streptococcus thermophilus LMD-9

56.753

100

0.573

Multiple sequence alignment