Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   DD555_RS08655 Genome accession   NZ_CP029166
Coordinates   1688296..1688742 (-) Length   148 a.a.
NCBI ID   WP_084927755.1    Uniprot ID   A0AB37XR55
Organism   Staphylococcus aureus strain SVH7513     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1683296..1693742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DD555_RS08625 (DD555_08625) gcvPA 1684222..1685568 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  DD555_RS08630 (DD555_08630) gcvT 1685588..1686679 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  DD555_RS08635 (DD555_08635) - 1686838..1687362 (-) 525 WP_001015117.1 shikimate kinase -
  DD555_RS08640 (DD555_08640) - 1687352..1687498 (-) 147 WP_001789879.1 hypothetical protein -
  DD555_RS08645 (DD555_08645) comGF 1687595..1688092 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  DD555_RS08650 (DD555_08650) comGE 1688010..1688309 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  DD555_RS08655 (DD555_08655) comGD 1688296..1688742 (-) 447 WP_084927755.1 competence type IV pilus minor pilin ComGD Machinery gene
  DD555_RS08660 (DD555_08660) comGC 1688720..1689031 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  DD555_RS08665 (DD555_08665) comGB 1689045..1690115 (-) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  DD555_RS08670 (DD555_08670) comGA 1690087..1691061 (-) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  DD555_RS08675 (DD555_08675) - 1691113..1691736 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  DD555_RS08680 (DD555_08680) - 1691733..1692062 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  DD555_RS08685 (DD555_08685) - 1692062..1693048 (-) 987 WP_000161314.1 ROK family glucokinase -
  DD555_RS08690 (DD555_08690) - 1693045..1693248 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17195.38 Da        Isoelectric Point: 10.3682

>NTDB_id=290877 DD555_RS08655 WP_084927755.1 1688296..1688742(-) (comGD) [Staphylococcus aureus strain SVH7513]
MEKQLQIRKQSAFTMIEMLVVMILISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=290877 DD555_RS08655 WP_084927755.1 1688296..1688742(-) (comGD) [Staphylococcus aureus strain SVH7513]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATATTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986

Multiple sequence alignment