Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   ELB75_RS09620 Genome accession   NZ_CP034670
Coordinates   1908707..1910734 (+) Length   675 a.a.
NCBI ID   WP_126983728.1    Uniprot ID   -
Organism   Eikenella corrodens strain KCOM 3110     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1903707..1915734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELB75_RS09600 (ELB75_09600) - 1904713..1905516 (+) 804 WP_126983725.1 c-type cytochrome -
  ELB75_RS09605 (ELB75_09605) - 1905857..1906672 (-) 816 WP_126984279.1 MJ0042-type zinc finger domain-containing protein -
  ELB75_RS09610 (ELB75_09610) prmA 1906923..1907816 (-) 894 WP_126983726.1 50S ribosomal protein L11 methyltransferase -
  ELB75_RS09615 (ELB75_09615) hscB 1908020..1908520 (+) 501 WP_126983727.1 Fe-S protein assembly co-chaperone HscB -
  ELB75_RS09620 (ELB75_09620) uvrB 1908707..1910734 (+) 2028 WP_126983728.1 excinuclease ABC subunit UvrB Machinery gene
  ELB75_RS12715 - 1910862..1911128 (+) 267 WP_206501448.1 ATP-binding protein -
  ELB75_RS09630 (ELB75_09630) - 1911185..1912585 (+) 1401 WP_126983729.1 hypothetical protein -
  ELB75_RS09640 (ELB75_09640) - 1913865..1914032 (+) 168 Protein_1872 GTP cyclohydrolase, FolE2/MptA family -
  ELB75_RS09645 (ELB75_09645) - 1914108..1914344 (-) 237 WP_126984280.1 helix-turn-helix transcriptional regulator -
  ELB75_RS09650 (ELB75_09650) - 1914517..1914789 (+) 273 WP_126983730.1 hypothetical protein -
  ELB75_RS12720 - 1914876..1915049 (-) 174 WP_206501449.1 hypothetical protein -
  ELB75_RS13135 (ELB75_09660) - 1915233..1915337 (-) 105 Protein_1876 carbonate dehydratase -

Sequence

Protein


Download         Length: 675 a.a.        Molecular weight: 76907.44 Da        Isoelectric Point: 5.0013

>NTDB_id=290506 ELB75_RS09620 WP_126983728.1 1908707..1910734(+) (uvrB) [Eikenella corrodens strain KCOM 3110]
MDIIQYPNSPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMAHNKTLAAQLY
AEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRLSATKNLMTRDDVIIVATVSAIYGIGDPTEY
QQMVLSVKEGDTIEQRDIIATLVSMQYERGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSL
HQRVGRYTVFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCKGIENYSRHFS
GKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDYGFRLPSARDNRPLKFHEFEKVMPQTVFVSA
TPAKYEEEHAGQVVEQVVRPTGLVDPQIIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRY
LHSDIDTVERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAARNVNGVAILYAD
KITDSMKAAIDETERRREKQMKFNEEHGIVPQQIKKQVKDIIDGVYHEEDGGKGRLKTKNKVKVGEIHNEEDAIKEIAKL
EKAMQQAARDLQFEEAAVLRDRIRGIKENLLFGAE

Nucleotide


Download         Length: 2028 bp        

>NTDB_id=290506 ELB75_RS09620 WP_126983728.1 1908707..1910734(+) (uvrB) [Eikenella corrodens strain KCOM 3110]
ATGGACATCATCCAATACCCCAATTCCCCTTTCAAACTCCACCAACCCTTCCCGCCCGCGGGCGACCAGCCCACCGCCAT
TGCCGGCCTGCTCGAAGGGCTTTCAGACGGTTTGGCCTATCAAACCTTGCTCGGCGTAACCGGTTCGGGCAAAACCTACA
CCATGGCGAACGTCATCGCGCAAAGCGGCCGCCCCGCCATCATCATGGCGCACAACAAAACCCTTGCCGCCCAGCTCTAC
GCCGAAATGCGCGAGTTTTTCCCCGAAAACGCGGTGGAATATTTCGTGTCCTACTACGACTATTACCAGCCCGAAGCCTA
TGTGCCCAGCCGCGACTTGTTCATCGAAAAAGACAGCGCAATCAACGAACACATCGAGCAAATGCGCCTTTCCGCCACCA
AAAACCTGATGACGCGCGACGACGTGATTATCGTCGCCACCGTGTCCGCCATTTACGGTATCGGCGACCCGACCGAGTAT
CAACAAATGGTGTTGTCCGTCAAAGAAGGCGACACCATCGAGCAGCGCGACATCATCGCCACGCTCGTTTCCATGCAGTA
CGAACGCGGCGATTTAGACTTCAAACGCGGCAGCTTCCGCGTACGCGGCGACGTGATTGACGTGTACCCCGCCGAAAGCT
CCGAAAACGCCTTGCGCATCAGCCTGTTTGACGACGAAATCGACCGCCTCGATATGTTTGATCCCCTTTCAGGCAGCCTG
CACCAGCGCGTCGGCCGCTACACCGTCTTCCCATCCAGCCACTACGTTACCCCGCGCGACACCGTATTGCGCGCCTGCGA
GTCCATCAAAGAAGAATTGCGCGAACGCATCGAATTTTTCGCCCGCGAACAACGCCCCGTCGAGCAACAACGCATCGAAC
AGCGCACCCGTTTCGACCTCGAAATGCTCTACGAAATGGGCTTCTGCAAAGGCATCGAAAACTATTCCCGCCACTTCTCC
GGCAAAAAAGAAGGCGAACCGCCGCCCACGCTGATGGACTACCTGCCCGATAACGCCATCATGTTCATCGACGAAAGCCA
CGTTACCGTTACCCAAATCGGCGGCATGTACAAAGGCGACGCCTCGCGCAAGCAAAACCTCGTGGATTACGGCTTCCGCC
TACCTTCCGCCCGCGACAACCGCCCGCTCAAATTCCACGAATTTGAAAAAGTCATGCCGCAAACCGTCTTCGTTTCCGCC
ACCCCCGCCAAATACGAAGAAGAACACGCCGGACAAGTGGTCGAACAAGTCGTCCGCCCCACAGGGCTGGTCGACCCCCA
AATCATCATCCGCCCCGTCGCCACCCAAGTTGATGACTTAATGAGCGAAATCAACGACCGCATCCAAAAAGGCGAACGCG
TACTCGTTACCACCCTCACCAAACGTATGGCGGAGCAACTCACCGACTACTACAGCGAACTCGGCATTAAAGTGCGCTAC
CTGCACAGCGACATCGACACCGTCGAGCGCGTTGAAATCATTAGAGATTTGCGGCTCGGACTATTTGACGTGCTGGTCGG
CATCAACCTCTTGCGCGAAGGCCTCGACATCCCCGAAGTCTCCCTCGTCGCCATCCTCGACGCCGACAAAGAAGGCTTCC
TGCGCTCGCACCGCAGCCTGATTCAAACCATAGGCCGCGCCGCGCGCAACGTGAACGGCGTCGCCATCCTGTACGCCGAC
AAAATCACCGACTCCATGAAGGCCGCCATCGACGAAACCGAACGCCGCCGCGAAAAACAGATGAAATTCAACGAAGAACA
CGGTATCGTGCCGCAGCAGATTAAAAAACAGGTCAAAGACATCATCGACGGCGTGTACCACGAAGAAGACGGCGGCAAAG
GTCGTCTGAAAACCAAAAACAAGGTCAAAGTCGGCGAGATTCACAACGAAGAAGACGCGATTAAAGAAATCGCCAAACTG
GAAAAAGCCATGCAGCAGGCGGCTAGAGATTTGCAGTTTGAAGAAGCGGCTGTGTTGCGGGATAGGATTCGGGGGATTAA
GGAGAATTTGTTGTTTGGGGCTGAGTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(444-549)

UvrB interaction domain (UvrB_inter)

(165-255)

UvrB/uvrC motif (UVR)

(635-668)

Type III restriction enzyme, res subunit (ResIII)

(23-144)

Ultra-violet resistance protein B (UvrB)

(557-598)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.505

98.222

0.545
  uvrB Streptococcus pneumoniae R6

55.505

98.222

0.545
  uvrB Streptococcus pneumoniae D39

55.505

98.222

0.545