Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   ELB75_RS04590 Genome accession   NZ_CP034670
Coordinates   899875..900345 (+) Length   156 a.a.
NCBI ID   WP_126982914.1    Uniprot ID   -
Organism   Eikenella corrodens strain KCOM 3110     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 894875..905345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELB75_RS12455 - 895038..895196 (+) 159 WP_164726806.1 hypothetical protein -
  ELB75_RS04565 (ELB75_04565) - 895330..896307 (+) 978 WP_126982909.1 pseudouridine synthase -
  ELB75_RS04570 (ELB75_04570) recO 896375..897115 (+) 741 WP_126982910.1 DNA repair protein RecO -
  ELB75_RS04575 (ELB75_04575) - 897157..898386 (+) 1230 WP_126982911.1 DUF711 family protein -
  ELB75_RS04580 (ELB75_04580) pdxJ 898484..899215 (+) 732 WP_126982912.1 pyridoxine 5'-phosphate synthase -
  ELB75_RS13015 (ELB75_04585) - 899398..899799 (+) 402 WP_126982913.1 type IV pilin protein -
  ELB75_RS04590 (ELB75_04590) comP 899875..900345 (+) 471 WP_126982914.1 type IV pilin protein Machinery gene
  ELB75_RS04595 (ELB75_04595) - 900374..900694 (+) 321 WP_126982915.1 hypothetical protein -
  ELB75_RS04600 (ELB75_04600) - 900754..901527 (+) 774 WP_126982916.1 exodeoxyribonuclease III -
  ELB75_RS04605 (ELB75_04605) - 901733..902089 (+) 357 WP_067440574.1 hypothetical protein -
  ELB75_RS12460 - 902095..902538 (+) 444 WP_164726808.1 hypothetical protein -
  ELB75_RS12465 - 902600..903004 (+) 405 WP_164726809.1 DUF302 domain-containing protein -
  ELB75_RS13020 - 903171..903296 (-) 126 WP_277600830.1 hypothetical protein -
  ELB75_RS04615 (ELB75_04615) folC 903357..904664 (+) 1308 WP_126982918.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17506.06 Da        Isoelectric Point: 8.8494

>NTDB_id=290479 ELB75_RS04590 WP_126982914.1 899875..900345(+) (comP) [Eikenella corrodens strain KCOM 3110]
MNGLSVSTQHGFTLMELMIIIAVVAILAAIAYPSYQSFVRKSRLEEANAALLENSRAMERFYARNRTFKATSTTWPALAV
SQTQHFCIKFQGNARGVLGDKYTIKAVAFDVNKEPRVLLINQDQTVRICQSSRSRCDNKEVFSGGNNIDQECELLH

Nucleotide


Download         Length: 471 bp        

>NTDB_id=290479 ELB75_RS04590 WP_126982914.1 899875..900345(+) (comP) [Eikenella corrodens strain KCOM 3110]
ATGAACGGCTTATCTGTTTCCACCCAACACGGTTTCACACTGATGGAGCTGATGATTATTATTGCTGTGGTGGCGATTTT
GGCGGCTATTGCGTATCCTTCATACCAATCGTTTGTGCGCAAATCTCGTTTGGAAGAGGCCAATGCTGCTTTATTGGAAA
ATAGCCGGGCAATGGAGCGTTTTTATGCGCGAAACCGCACGTTTAAAGCCACTTCCACCACTTGGCCGGCATTGGCGGTT
AGCCAAACGCAGCATTTCTGTATTAAATTCCAAGGCAATGCGCGCGGGGTGTTGGGAGATAAATATACAATTAAAGCCGT
GGCTTTTGATGTGAATAAAGAGCCACGGGTTTTGTTGATTAACCAAGACCAAACGGTACGGATTTGCCAAAGCAGCCGTA
GCCGTTGCGACAATAAAGAAGTGTTTTCCGGCGGTAATAATATCGACCAAGAATGCGAATTATTGCATTAG

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(33-109)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

42.953

95.513

0.41
  comP Neisseria gonorrhoeae MS11

41.333

96.154

0.397
  comP Neisseria meningitidis 8013

40.667

96.154

0.391