Detailed information NTG0290448

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CSC28_RS26820
• Genome accession: NZ_CP029093
• Coordinates: 5310148..5311020 (+)
• Length: 290 a.a.
• NCBI ID: WP_058146767.1
• Uniprot ID: -
• Organism: Pseudomonas paraeruginosa strain AR441
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5305148..5316020

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CSC28_RS26805 (CSC28_5294)	-	5306531..5306998 (-)	468	WP_034081326.1	pilin	-
CSC28_RS26810 (CSC28_5295)	pilB	5307221..5308924 (+)	1704	WP_033998207.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CSC28_RS26815 (CSC28_5296)	pilC	5308928..5310145 (+)	1218	WP_034081324.1	type II secretion system F family protein	Machinery gene
CSC28_RS26820 (CSC28_5297)	pilD	5310148..5311020 (+)	873	WP_058146767.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
CSC28_RS26825 (CSC28_5298)	coaE	5311017..5311628 (+)	612	WP_003152767.1	dephospho-CoA kinase	-
CSC28_RS26830 (CSC28_5299)	yacG	5311625..5311825 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
CSC28_RS26835 (CSC28_5300)	-	5311863..5312072 (-)	210	WP_033998211.1	hypothetical protein	-
CSC28_RS26840 (CSC28_5301)	-	5312178..5312867 (-)	690	WP_012077298.1	energy-coupling factor ABC transporter permease	-
CSC28_RS26845 (CSC28_5302)	-	5312864..5313334 (-)	471	WP_079385052.1	FAD/FMN-containing dehydrogenase	-
CSC28_RS26850 (CSC28_5303)	-	5313331..5313756 (-)	426	WP_003152776.1	GNAT family N-acetyltransferase	-
CSC28_RS26855 (CSC28_5304)	-	5313888..5314517 (+)	630	WP_033998217.1	DUF1780 domain-containing protein	-
CSC28_RS26860 (CSC28_5305)	-	5314514..5314954 (+)	441	WP_012077299.1	MOSC domain-containing protein	-
CSC28_RS26865 (CSC28_5306)	-	5314989..5315159 (+)	171	WP_003152781.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31739.77 Da
• Isoelectric Point: 8.0434

>NTDB_id=290448 CSC28_RS26820 WP_058146767.1 5310148..5311020(+) (pilD) [Pseudomonas paraeruginosa strain AR441]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPVLSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AILGAIMLRLRNAASGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=290448 CSC28_RS26820 WP_058146767.1 5310148..5311020(+) (pilD) [Pseudomonas paraeruginosa strain AR441]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGT
CCCTGGGAAAACATCCCGGTGCTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAGCTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGACGCGCTGTTCGGCGCGGT
GTTCGGCTACCTCAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGCGCCTGGGGCGGCTGGCAGGTCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCCATCCTCGGGGCGATCATGCTGCGCCTGCGCAACGCCGCAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCATTGCTCTGGGGTGATCAAATAACCCGGACCTATTTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.357	97.586	0.521
pilD	Acinetobacter baumannii D1279779	50.883	97.586	0.497
pilD	Acinetobacter nosocomialis M2	50.177	97.586	0.49
pilD	Neisseria gonorrhoeae MS11	50	95.862	0.479