Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ECS88_RS03285 Genome accession   NC_011742
Coordinates   497920..498525 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli S88     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 492920..503525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECS88_RS28235 - 493474..493572 (+) 99 Protein_450 hypothetical protein -
  ECS88_RS03250 (ECS88_0463) rsmS 493625..493786 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  ECS88_RS03255 (ECS88_0464) priC 493800..494327 (-) 528 WP_000844868.1 primosomal replication protein N'' -
  ECS88_RS03260 (ECS88_0465) ybaN 494397..494774 (+) 378 WP_001188900.1 DUF454 family protein -
  ECS88_RS03270 (ECS88_0466) apt 494927..495478 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  ECS88_RS03275 (ECS88_0467) dnaX 495607..497538 (+) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  ECS88_RS03280 (ECS88_0468) ybaB 497591..497920 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  ECS88_RS03285 (ECS88_0469) recR 497920..498525 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  ECS88_RS03290 (ECS88_0470) htpG 498635..500509 (+) 1875 WP_000678211.1 molecular chaperone HtpG -
  ECS88_RS03300 (ECS88_0471) adk 500690..501334 (+) 645 WP_001331495.1 adenylate kinase -
  ECS88_RS03305 (ECS88_0472) hemH 501466..502428 (+) 963 WP_001250129.1 ferrochelatase -
  ECS88_RS03310 (ECS88_0473) aes 502425..503384 (-) 960 WP_000801795.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=29026 ECS88_RS03285 WP_001195025.1 497920..498525(+) (recR) [Escherichia coli S88]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=29026 ECS88_RS03285 WP_001195025.1 497920..498525(+) (recR) [Escherichia coli S88]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment