Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   VIBHAR_RS00360 Genome accession   NC_009783
Coordinates   74206..74838 (+) Length   210 a.a.
NCBI ID   WP_012126461.1    Uniprot ID   -
Organism   Vibrio campbellii ATCC BAA-1116     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 69206..79838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIBHAR_RS00340 (VIBHAR_00071) - 71102..71581 (+) 480 WP_005432772.1 TIGR02444 family protein -
  VIBHAR_RS00345 (VIBHAR_00072) - 71682..72689 (+) 1008 WP_012126460.1 hydrolase -
  VIBHAR_RS00350 (VIBHAR_00073) - 72760..72972 (+) 213 WP_005432763.1 YheU family protein -
  VIBHAR_RS00355 (VIBHAR_00074) - 73097..73966 (+) 870 WP_005432770.1 phosphoribulokinase -
  VIBHAR_RS00360 (VIBHAR_00075) crp 74206..74838 (+) 633 WP_012126461.1 cAMP-activated global transcriptional regulator CRP Regulator
  VIBHAR_RS00365 (VIBHAR_00076) - 75036..75827 (-) 792 WP_012126462.1 DUF1338 domain-containing protein -
  VIBHAR_RS00370 (VIBHAR_00077) astD 76092..77549 (-) 1458 WP_012126463.1 succinylglutamate-semialdehyde dehydrogenase -
  VIBHAR_RS00375 (VIBHAR_00078) astA 77578..78597 (-) 1020 WP_012126464.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23723.51 Da        Isoelectric Point: 7.4011

>NTDB_id=29012 VIBHAR_RS00360 WP_012126461.1 74206..74838(+) (crp) [Vibrio campbellii ATCC BAA-1116]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTDRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=29012 VIBHAR_RS00360 WP_012126461.1 74206..74838(+) (crp) [Vibrio campbellii ATCC BAA-1116]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
GAGCACGCTAATTCACGCGGGCGAAAAAGCAGAGACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAAGGCGACTTCATTGGTGAGCTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGCGCTAAATCTCCTTGTGAAGTGGCAGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTTAACCCAGACATCCTAATGCGCCTTTCTGCGCAAATGGCTCGTCGTCTACAAGTTACTAGCCAAAAAGTGGGTG
ACCTAGCGTTCCTAGACGTAACTGATCGTATCGCTCAGACTCTTCTGAACCTTGCTAAACAGCCAGATGCGATGACGCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATTGTTGGCTGTTCTCGTGAGACAGTAGGCCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCGCACGGTAAAACTATCGTTGTTTACGGGACTCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(143-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment