Detailed information NTG0290067

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: DDT10_RS16895
• Genome accession: NZ_CP029071
• Coordinates: 3451126..3452289 (-)
• Length: 387 a.a.
• NCBI ID: WP_007407484.1
• Uniprot ID: A3KLC1
• Organism: Bacillus amyloliquefaciens strain ALB79
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3446126..3457289

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DDT10_RS16865 (DDT10_16865)	-	3446391..3446810 (-)	420	WP_012118571.1	TIGR03826 family flagellar region protein	-
DDT10_RS16870 (DDT10_16870)	comFC	3446884..3447573 (-)	690	WP_199910801.1	phosphoribosyltransferase family protein	Machinery gene
DDT10_RS16875 (DDT10_16875)	-	3447579..3447863 (-)	285	WP_003151389.1	competence protein ComFB	-
DDT10_RS16880 (DDT10_16880)	comFA	3447921..3449306 (-)	1386	WP_053574011.1	DEAD/DEAH box helicase	Machinery gene
DDT10_RS16885 (DDT10_16885)	-	3449414..3450262 (-)	849	WP_053574012.1	DegV family protein	-
DDT10_RS16890 (DDT10_16890)	degU	3450360..3451049 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
DDT10_RS16895 (DDT10_16895)	degS	3451126..3452289 (-)	1164	WP_007407484.1	two-component sensor histidine kinase DegS	Regulator
DDT10_RS16900 (DDT10_16900)	-	3452512..3453159 (+)	648	WP_003151384.1	YigZ family protein	-
DDT10_RS16905 (DDT10_16905)	-	3453164..3454378 (+)	1215	WP_015418337.1	LCP family protein	-
DDT10_RS16910 (DDT10_16910)	-	3454477..3455553 (-)	1077	WP_003151382.1	MraY family glycosyltransferase	-
DDT10_RS16915 (DDT10_16915)	-	3455686..3456882 (-)	1197	WP_053574013.1	glycosyltransferase	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 45014.78 Da
• Isoelectric Point: 6.8616

>NTDB_id=290067 DDT10_RS16895 WP_007407484.1 3451126..3452289(-) (degS) [Bacillus amyloliquefaciens strain ALB79]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide

• Length: 1164 bp

>NTDB_id=290067 DDT10_RS16895 WP_007407484.1 3451126..3452289(-) (degS) [Bacillus amyloliquefaciens strain ALB79]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATTATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase (HisKA_3) (180-248)

3D structure

• AlphaFold DB: A3KLC1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	95.584	99.483	0.951