Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   DDT10_RS16890 Genome accession   NZ_CP029071
Coordinates   3450360..3451049 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain ALB79     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3445360..3456049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT10_RS16855 (DDT10_16855) - 3445558..3446040 (-) 483 WP_053574009.1 flagellar protein FlgN -
  DDT10_RS16860 (DDT10_16860) flgM 3446055..3446321 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  DDT10_RS16865 (DDT10_16865) - 3446391..3446810 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  DDT10_RS16870 (DDT10_16870) comFC 3446884..3447573 (-) 690 WP_199910801.1 phosphoribosyltransferase family protein Machinery gene
  DDT10_RS16875 (DDT10_16875) - 3447579..3447863 (-) 285 WP_003151389.1 competence protein ComFB -
  DDT10_RS16880 (DDT10_16880) comFA 3447921..3449306 (-) 1386 WP_053574011.1 DEAD/DEAH box helicase Machinery gene
  DDT10_RS16885 (DDT10_16885) - 3449414..3450262 (-) 849 WP_053574012.1 DegV family protein -
  DDT10_RS16890 (DDT10_16890) degU 3450360..3451049 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  DDT10_RS16895 (DDT10_16895) degS 3451126..3452289 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  DDT10_RS16900 (DDT10_16900) - 3452512..3453159 (+) 648 WP_003151384.1 YigZ family protein -
  DDT10_RS16905 (DDT10_16905) - 3453164..3454378 (+) 1215 WP_015418337.1 LCP family protein -
  DDT10_RS16910 (DDT10_16910) - 3454477..3455553 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=290066 DDT10_RS16890 WP_003219701.1 3450360..3451049(-) (degU) [Bacillus amyloliquefaciens strain ALB79]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=290066 DDT10_RS16890 WP_003219701.1 3450360..3451049(-) (degU) [Bacillus amyloliquefaciens strain ALB79]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCTATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment