Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   DDT10_RS14785 Genome accession   NZ_CP029071
Coordinates   3014871..3015515 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens strain ALB79     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3009871..3020515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT10_RS14750 (DDT10_14750) - 3011056..3011487 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  DDT10_RS14755 (DDT10_14755) - 3011487..3011828 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  DDT10_RS14760 (DDT10_14760) - 3011821..3013302 (+) 1482 WP_053574131.1 Na+/H+ antiporter subunit D -
  DDT10_RS14765 (DDT10_14765) - 3013308..3013784 (+) 477 WP_007613428.1 Na+/H+ antiporter subunit E -
  DDT10_RS14770 (DDT10_14770) - 3013784..3014068 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  DDT10_RS14775 (DDT10_14775) mnhG 3014052..3014426 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  DDT10_RS14780 (DDT10_14780) - 3014466..3014849 (-) 384 WP_053574130.1 hotdog fold thioesterase -
  DDT10_RS14785 (DDT10_14785) comA 3014871..3015515 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  DDT10_RS14790 (DDT10_14790) comP 3015596..3017899 (-) 2304 WP_040238945.1 histidine kinase Regulator
  DDT10_RS14795 (DDT10_14795) comX 3017919..3018098 (-) 180 WP_306383677.1 competence pheromone ComX -
  DDT10_RS14800 (DDT10_14800) comQ 3018052..3019038 (-) 987 WP_269195024.1 class 1 isoprenoid biosynthesis enzyme Regulator
  DDT10_RS14805 (DDT10_14805) degQ 3019169..3019309 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  DDT10_RS14815 (DDT10_14815) - 3019772..3020113 (+) 342 WP_007408677.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=290058 DDT10_RS14785 WP_003152052.1 3014871..3015515(-) (comA) [Bacillus amyloliquefaciens strain ALB79]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=290058 DDT10_RS14785 WP_003152052.1 3014871..3015515(-) (comA) [Bacillus amyloliquefaciens strain ALB79]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGACGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGACAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment