Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   DDT09_RS17230 Genome accession   NZ_CP029070
Coordinates   3486211..3486900 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain ALB69     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3481211..3491900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT09_RS17195 (DDT09_17195) - 3481409..3481891 (-) 483 WP_003151394.1 flagellar protein FlgN -
  DDT09_RS17200 (DDT09_17200) flgM 3481906..3482172 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  DDT09_RS17205 (DDT09_17205) - 3482242..3482661 (-) 420 WP_061861586.1 TIGR03826 family flagellar region protein -
  DDT09_RS17210 (DDT09_17210) comFC 3482735..3483424 (-) 690 WP_202729384.1 phosphoribosyltransferase family protein Machinery gene
  DDT09_RS17215 (DDT09_17215) - 3483430..3483714 (-) 285 WP_045209016.1 competence protein ComFB -
  DDT09_RS17220 (DDT09_17220) comFA 3483772..3485157 (-) 1386 WP_061861588.1 DEAD/DEAH box helicase Machinery gene
  DDT09_RS17225 (DDT09_17225) - 3485265..3486113 (-) 849 WP_003151387.1 DegV family protein -
  DDT09_RS17230 (DDT09_17230) degU 3486211..3486900 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  DDT09_RS17235 (DDT09_17235) degS 3486977..3488140 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  DDT09_RS17240 (DDT09_17240) - 3488363..3489010 (+) 648 WP_007614107.1 YigZ family protein -
  DDT09_RS17245 (DDT09_17245) - 3489015..3490208 (+) 1194 WP_109680545.1 LCP family protein -
  DDT09_RS17250 (DDT09_17250) - 3490307..3491383 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=289989 DDT09_RS17230 WP_003219701.1 3486211..3486900(-) (degU) [Bacillus amyloliquefaciens strain ALB69]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=289989 DDT09_RS17230 WP_003219701.1 3486211..3486900(-) (degU) [Bacillus amyloliquefaciens strain ALB69]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCATGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGTA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment