Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   DDT09_RS17220 Genome accession   NZ_CP029070
Coordinates   3483772..3485157 (-) Length   461 a.a.
NCBI ID   WP_061861588.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB69     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3478772..3490157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT09_RS17185 (DDT09_17185) flgL 3478947..3479864 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  DDT09_RS17190 (DDT09_17190) flgK 3479876..3481393 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  DDT09_RS17195 (DDT09_17195) - 3481409..3481891 (-) 483 WP_003151394.1 flagellar protein FlgN -
  DDT09_RS17200 (DDT09_17200) flgM 3481906..3482172 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  DDT09_RS17205 (DDT09_17205) - 3482242..3482661 (-) 420 WP_061861586.1 TIGR03826 family flagellar region protein -
  DDT09_RS17210 (DDT09_17210) comFC 3482735..3483424 (-) 690 WP_202729384.1 phosphoribosyltransferase family protein Machinery gene
  DDT09_RS17215 (DDT09_17215) - 3483430..3483714 (-) 285 WP_045209016.1 competence protein ComFB -
  DDT09_RS17220 (DDT09_17220) comFA 3483772..3485157 (-) 1386 WP_061861588.1 DEAD/DEAH box helicase Machinery gene
  DDT09_RS17225 (DDT09_17225) - 3485265..3486113 (-) 849 WP_003151387.1 DegV family protein -
  DDT09_RS17230 (DDT09_17230) degU 3486211..3486900 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  DDT09_RS17235 (DDT09_17235) degS 3486977..3488140 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  DDT09_RS17240 (DDT09_17240) - 3488363..3489010 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52537.90 Da        Isoelectric Point: 10.2278

>NTDB_id=289988 DDT09_RS17220 WP_061861588.1 3483772..3485157(-) (comFA) [Bacillus amyloliquefaciens strain ALB69]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRVDELTSLYSWNQTPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKEGQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=289988 DDT09_RS17220 WP_061861588.1 3483772..3485157(-) (comFA) [Bacillus amyloliquefaciens strain ALB69]
ATGTCCGAGGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
CTCAGACCAGCGTATCAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGTTGATGAACTGACATCATTATATTCTTGGAATCAAACCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGGGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTACTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAAGACAAAGGCCGCCTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCGACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTTCCGG
AGCCGCGTTTTTTGTGGTGCGGAAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGTCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACGTACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACCGAGAGCGCGCTCGTGCAGATCGCAGGCAGAACGGGAAGGCACTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAGCATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.826

99.783

0.627

Multiple sequence alignment