Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   BAALB65_RS12410 Genome accession   NZ_CP029069
Coordinates   2522630..2523700 (-) Length   356 a.a.
NCBI ID   WP_014418378.1    Uniprot ID   A0AAP4DGV9
Organism   Bacillus amyloliquefaciens strain ALB65     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2517630..2528700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAALB65_RS12360 (BAALB65_12360) - 2517689..2518273 (-) 585 WP_014418370.1 signal peptidase I -
  BAALB65_RS12365 (BAALB65_12365) tapA 2518245..2518916 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  BAALB65_RS12370 (BAALB65_12370) - 2519175..2519504 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  BAALB65_RS12375 (BAALB65_12375) - 2519545..2519724 (-) 180 WP_003153093.1 YqzE family protein -
  BAALB65_RS12380 (BAALB65_12380) comGG 2519781..2520158 (-) 378 WP_017418138.1 competence type IV pilus minor pilin ComGG Machinery gene
  BAALB65_RS12385 (BAALB65_12385) comGF 2520159..2520554 (-) 396 WP_025649850.1 competence type IV pilus minor pilin ComGF -
  BAALB65_RS12390 (BAALB65_12390) comGE 2520568..2520882 (-) 315 WP_109567074.1 competence type IV pilus minor pilin ComGE Machinery gene
  BAALB65_RS12395 (BAALB65_12395) comGD 2520866..2521303 (-) 438 WP_095061019.1 competence type IV pilus minor pilin ComGD Machinery gene
  BAALB65_RS12400 (BAALB65_12400) comGC 2521293..2521559 (-) 267 WP_050496152.1 competence type IV pilus major pilin ComGC Machinery gene
  BAALB65_RS12405 (BAALB65_12405) comGB 2521606..2522643 (-) 1038 WP_053284924.1 competence type IV pilus assembly protein ComGB Machinery gene
  BAALB65_RS12410 (BAALB65_12410) comGA 2522630..2523700 (-) 1071 WP_014418378.1 competence type IV pilus ATPase ComGA Machinery gene
  BAALB65_RS12415 (BAALB65_12415) - 2523893..2524843 (-) 951 WP_014418379.1 magnesium transporter CorA family protein -
  BAALB65_RS12420 (BAALB65_12420) - 2524989..2526290 (+) 1302 WP_029973873.1 hemolysin family protein -
  BAALB65_RS12425 (BAALB65_12425) - 2526328..2527158 (-) 831 WP_070082115.1 STAS domain-containing protein -
  BAALB65_RS12435 (BAALB65_12435) - 2527365..2527745 (-) 381 WP_003153079.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  BAALB65_RS12440 (BAALB65_12440) - 2527982..2528227 (+) 246 WP_003153078.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40529.81 Da        Isoelectric Point: 9.3485

>NTDB_id=289891 BAALB65_RS12410 WP_014418378.1 2522630..2523700(-) (comGA) [Bacillus amyloliquefaciens strain ALB65]
MKNIETYSRNIINEAYTARASDIHIVPRERDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKQQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEENCSVYCRMYRQTRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=289891 BAALB65_RS12410 WP_014418378.1 2522630..2523700(-) (comGA) [Bacillus amyloliquefaciens strain ALB65]
GTGAAAAATATTGAAACATACAGCAGGAACATCATAAACGAGGCCTATACGGCAAGGGCTTCAGATATACACATTGTGCC
GAGAGAAAGGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGTG
TAAGGCTTATTTCTCATTTCAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGAAAGCCGCAAAACGGGTCATTGTCT
CTGCCGCTTCCGACAGAAACCGTTCATTTGAGAATGTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCAGCAGATTCCCCCTCTGGATAAACTGTCCTTATTTCGGGGGGCAGGCGCCGCACTATTGTCCTTTCTGA
AGCATTCGCACGGCCTGCTTCTGTTTACCGGCCCGACCGGATCTGGAAAAACGACCACTCTTTACTCGCTTGTCAACTAT
GCAAAACGGCATTTCAACCGGCGGATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGCTGCAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATGATCATCTTAG
GGGAAATCAGGGATGCCGAGACGGCTGAAATCGCAGTCCGCGCGGCAATGACGGGACACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTTGGCGTGAACATGACAGAAATTGAACAAACCGTCATTGC
CATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAACTGTTCCGTGTACTGCCGGATGTACA
GGCAGACACGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAGAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATCGCGCTCGGCTATGTCACGACCGACAATTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

82.303

100

0.823
  pilB Glaesserella parasuis strain SC1401

38.793

97.753

0.379
  pilF Thermus thermophilus HB27

37.892

98.596

0.374

Multiple sequence alignment