Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   BAALB65_RS12380 Genome accession   NZ_CP029069
Coordinates   2519781..2520158 (-) Length   125 a.a.
NCBI ID   WP_017418138.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB65     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2514781..2525158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAALB65_RS12340 (BAALB65_12340) - 2515278..2516072 (+) 795 WP_109567072.1 YqhG family protein -
  BAALB65_RS12345 (BAALB65_12345) sinI 2516249..2516422 (+) 174 WP_014418369.1 anti-repressor SinI family protein Regulator
  BAALB65_RS12350 (BAALB65_12350) sinR 2516456..2516791 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  BAALB65_RS12355 (BAALB65_12355) - 2516839..2517624 (-) 786 WP_109567073.1 TasA family protein -
  BAALB65_RS12360 (BAALB65_12360) - 2517689..2518273 (-) 585 WP_014418370.1 signal peptidase I -
  BAALB65_RS12365 (BAALB65_12365) tapA 2518245..2518916 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  BAALB65_RS12370 (BAALB65_12370) - 2519175..2519504 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  BAALB65_RS12375 (BAALB65_12375) - 2519545..2519724 (-) 180 WP_003153093.1 YqzE family protein -
  BAALB65_RS12380 (BAALB65_12380) comGG 2519781..2520158 (-) 378 WP_017418138.1 competence type IV pilus minor pilin ComGG Machinery gene
  BAALB65_RS12385 (BAALB65_12385) comGF 2520159..2520554 (-) 396 WP_025649850.1 competence type IV pilus minor pilin ComGF -
  BAALB65_RS12390 (BAALB65_12390) comGE 2520568..2520882 (-) 315 WP_109567074.1 competence type IV pilus minor pilin ComGE Machinery gene
  BAALB65_RS12395 (BAALB65_12395) comGD 2520866..2521303 (-) 438 WP_095061019.1 competence type IV pilus minor pilin ComGD Machinery gene
  BAALB65_RS12400 (BAALB65_12400) comGC 2521293..2521559 (-) 267 WP_050496152.1 competence type IV pilus major pilin ComGC Machinery gene
  BAALB65_RS12405 (BAALB65_12405) comGB 2521606..2522643 (-) 1038 WP_053284924.1 competence type IV pilus assembly protein ComGB Machinery gene
  BAALB65_RS12410 (BAALB65_12410) comGA 2522630..2523700 (-) 1071 WP_014418378.1 competence type IV pilus ATPase ComGA Machinery gene
  BAALB65_RS12415 (BAALB65_12415) - 2523893..2524843 (-) 951 WP_014418379.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14125.01 Da        Isoelectric Point: 9.7165

>NTDB_id=289886 BAALB65_RS12380 WP_017418138.1 2519781..2520158(-) (comGG) [Bacillus amyloliquefaciens strain ALB65]
MYKSDGFIYPAVLFVSAAVLLVISYTSSDFITRKTFAKEAGEYWIGENLLQNGALLSSRHMTQGQKGQTGTQRFPYGTVS
FHITGSDRRETVQVTIQAETTTGTRREAHLLFDQKKKQLIQWTEV

Nucleotide


Download         Length: 378 bp        

>NTDB_id=289886 BAALB65_RS12380 WP_017418138.1 2519781..2520158(-) (comGG) [Bacillus amyloliquefaciens strain ALB65]
ATGTACAAATCTGACGGTTTTATATATCCCGCGGTTCTGTTTGTTTCTGCCGCAGTTTTACTTGTCATCAGCTATACTTC
ATCTGATTTCATCACCCGAAAAACATTTGCAAAAGAGGCCGGGGAGTACTGGATCGGAGAGAACCTGCTCCAAAACGGCG
CGCTGCTGTCAAGCCGCCATATGACACAGGGACAAAAGGGCCAAACTGGTACACAGCGTTTTCCGTACGGCACCGTTTCT
TTTCACATCACCGGGAGTGATCGAAGGGAAACGGTTCAGGTTACAATTCAGGCGGAAACCACGACAGGCACGAGACGGGA
GGCTCACCTTTTGTTCGATCAGAAGAAGAAACAGCTGATTCAATGGACGGAAGTATAA

Domains

Predicted by InterproScan.

ComG operon protein 7 (ComGG)

(30-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Bacillus subtilis subsp. subtilis str. 168

51.613

99.2

0.512

Multiple sequence alignment