Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BAALB65_RS12350 Genome accession   NZ_CP029069
Coordinates   2516456..2516791 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB65     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2511456..2521791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAALB65_RS12330 (BAALB65_12330) gcvT 2512062..2513162 (-) 1101 WP_061890721.1 glycine cleavage system aminomethyltransferase GcvT -
  BAALB65_RS12335 (BAALB65_12335) - 2513586..2515256 (+) 1671 WP_021494309.1 SNF2-related protein -
  BAALB65_RS12340 (BAALB65_12340) - 2515278..2516072 (+) 795 WP_109567072.1 YqhG family protein -
  BAALB65_RS12345 (BAALB65_12345) sinI 2516249..2516422 (+) 174 WP_014418369.1 anti-repressor SinI family protein Regulator
  BAALB65_RS12350 (BAALB65_12350) sinR 2516456..2516791 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  BAALB65_RS12355 (BAALB65_12355) - 2516839..2517624 (-) 786 WP_109567073.1 TasA family protein -
  BAALB65_RS12360 (BAALB65_12360) - 2517689..2518273 (-) 585 WP_014418370.1 signal peptidase I -
  BAALB65_RS12365 (BAALB65_12365) tapA 2518245..2518916 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  BAALB65_RS12370 (BAALB65_12370) - 2519175..2519504 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  BAALB65_RS12375 (BAALB65_12375) - 2519545..2519724 (-) 180 WP_003153093.1 YqzE family protein -
  BAALB65_RS12380 (BAALB65_12380) comGG 2519781..2520158 (-) 378 WP_017418138.1 competence type IV pilus minor pilin ComGG Machinery gene
  BAALB65_RS12385 (BAALB65_12385) comGF 2520159..2520554 (-) 396 WP_025649850.1 competence type IV pilus minor pilin ComGF -
  BAALB65_RS12390 (BAALB65_12390) comGE 2520568..2520882 (-) 315 WP_109567074.1 competence type IV pilus minor pilin ComGE Machinery gene
  BAALB65_RS12395 (BAALB65_12395) comGD 2520866..2521303 (-) 438 WP_095061019.1 competence type IV pilus minor pilin ComGD Machinery gene
  BAALB65_RS12400 (BAALB65_12400) comGC 2521293..2521559 (-) 267 WP_050496152.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=289885 BAALB65_RS12350 WP_003153104.1 2516456..2516791(+) (sinR) [Bacillus amyloliquefaciens strain ALB65]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=289885 BAALB65_RS12350 WP_003153104.1 2516456..2516791(+) (sinR) [Bacillus amyloliquefaciens strain ALB65]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment