Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinI   Type   Regulator
Locus tag   BAALB65_RS12345 Genome accession   NZ_CP029069
Coordinates   2516249..2516422 (+) Length   57 a.a.
NCBI ID   WP_014418369.1    Uniprot ID   I2C7P2
Organism   Bacillus amyloliquefaciens strain ALB65     
Function   inhibit the expression of sinR (predicted from homology)   
Competence regulation

Genomic Context

Location: 2511249..2521422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAALB65_RS12330 (BAALB65_12330) gcvT 2512062..2513162 (-) 1101 WP_061890721.1 glycine cleavage system aminomethyltransferase GcvT -
  BAALB65_RS12335 (BAALB65_12335) - 2513586..2515256 (+) 1671 WP_021494309.1 SNF2-related protein -
  BAALB65_RS12340 (BAALB65_12340) - 2515278..2516072 (+) 795 WP_109567072.1 YqhG family protein -
  BAALB65_RS12345 (BAALB65_12345) sinI 2516249..2516422 (+) 174 WP_014418369.1 anti-repressor SinI family protein Regulator
  BAALB65_RS12350 (BAALB65_12350) sinR 2516456..2516791 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  BAALB65_RS12355 (BAALB65_12355) - 2516839..2517624 (-) 786 WP_109567073.1 TasA family protein -
  BAALB65_RS12360 (BAALB65_12360) - 2517689..2518273 (-) 585 WP_014418370.1 signal peptidase I -
  BAALB65_RS12365 (BAALB65_12365) tapA 2518245..2518916 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  BAALB65_RS12370 (BAALB65_12370) - 2519175..2519504 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  BAALB65_RS12375 (BAALB65_12375) - 2519545..2519724 (-) 180 WP_003153093.1 YqzE family protein -
  BAALB65_RS12380 (BAALB65_12380) comGG 2519781..2520158 (-) 378 WP_017418138.1 competence type IV pilus minor pilin ComGG Machinery gene
  BAALB65_RS12385 (BAALB65_12385) comGF 2520159..2520554 (-) 396 WP_025649850.1 competence type IV pilus minor pilin ComGF -
  BAALB65_RS12390 (BAALB65_12390) comGE 2520568..2520882 (-) 315 WP_109567074.1 competence type IV pilus minor pilin ComGE Machinery gene
  BAALB65_RS12395 (BAALB65_12395) comGD 2520866..2521303 (-) 438 WP_095061019.1 competence type IV pilus minor pilin ComGD Machinery gene

Sequence

Protein


Download         Length: 57 a.a.        Molecular weight: 6642.60 Da        Isoelectric Point: 9.8168

>NTDB_id=289884 BAALB65_RS12345 WP_014418369.1 2516249..2516422(+) (sinI) [Bacillus amyloliquefaciens strain ALB65]
MKNAKTEFSQLDKEWVELILEAQKANISLEEIRKYLLSNKKSSQHIQAARSHTVNPF

Nucleotide


Download         Length: 174 bp        

>NTDB_id=289884 BAALB65_RS12345 WP_014418369.1 2516249..2516422(+) (sinI) [Bacillus amyloliquefaciens strain ALB65]
ATGAAAAATGCAAAAACAGAATTTTCACAATTAGATAAGGAATGGGTTGAGCTGATATTAGAAGCCCAAAAAGCAAATAT
CAGCCTAGAAGAAATACGCAAATACCTGCTTTCGAATAAAAAGTCTTCTCAACATATCCAGGCAGCCAGAAGTCATACCG
TAAATCCTTTCTGA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(11-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7P2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinI Bacillus subtilis subsp. subtilis str. 168

71.93

100

0.719

Multiple sequence alignment