Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DDJ96_RS00040 Genome accession   NZ_CP029066
Coordinates   9269..9790 (+) Length   173 a.a.
NCBI ID   WP_010734556.1    Uniprot ID   A0A1A6GBY5
Organism   Enterococcus mundtii strain Pe103     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4269..14790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDJ96_RS00030 (DDJ96_00030) gyrA 6188..8683 (+) 2496 WP_023518859.1 DNA gyrase subunit A -
  DDJ96_RS00035 (DDJ96_00035) rpsF 8922..9221 (+) 300 WP_019723039.1 30S ribosomal protein S6 -
  DDJ96_RS00040 (DDJ96_00040) ssb 9269..9790 (+) 522 WP_010734556.1 single-stranded DNA-binding protein Machinery gene
  DDJ96_RS00045 (DDJ96_00045) rpsR 9816..10052 (+) 237 WP_010734555.1 30S ribosomal protein S18 -
  DDJ96_RS00050 (DDJ96_00050) - 10219..12192 (+) 1974 WP_010734554.1 DHH family phosphoesterase -
  DDJ96_RS00055 (DDJ96_00055) rplI 12198..12650 (+) 453 WP_010734553.1 50S ribosomal protein L9 -
  DDJ96_RS00060 (DDJ96_00060) dnaB 12840..14207 (+) 1368 WP_010734552.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18939.41 Da        Isoelectric Point: 4.5551

>NTDB_id=289809 DDJ96_RS00040 WP_010734556.1 9269..9790(+) (ssb) [Enterococcus mundtii strain Pe103]
MINNVVLVGRLTKDPDLRYTSSGTAVATFTLAVNRNFTSQNGNREADFINCVIWRKSAETLANYAHKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQLLESRAASENRQQSGGYQDTGQSTNNFGGNGGNNNYNQTSQSSNGMPDFDRDSSDPFGS
SSTIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=289809 DDJ96_RS00040 WP_010734556.1 9269..9790(+) (ssb) [Enterococcus mundtii strain Pe103]
TTGATTAATAACGTTGTACTAGTTGGACGTCTGACAAAAGATCCAGATTTACGATATACATCAAGTGGCACTGCTGTAGC
AACGTTCACTTTAGCTGTCAATCGTAACTTCACGAGCCAAAACGGCAACCGTGAGGCGGATTTTATTAATTGTGTGATTT
GGCGAAAATCAGCAGAAACACTAGCAAACTATGCACATAAAGGAACACTTTTAGGTGTAACTGGTCGTATTCAAACGCGT
TCTTATGATAATCAACAAGGACAACGTGTGTACGTAACAGAAGTAGTTGCTGAAAACTTCCAATTATTGGAAAGTCGTGC
AGCATCTGAAAACCGTCAACAAAGCGGTGGCTACCAAGACACTGGTCAATCGACAAATAATTTTGGCGGAAACGGCGGAA
ACAATAACTATAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTTGATCGTGATTCTTCTGATCCATTCGGATCA
AGCTCAACGATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A6GBY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.77

100

0.601
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.593

100

0.595
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

61.272

0.37

Multiple sequence alignment