Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   EJF26_RS02150 Genome accession   NZ_CP034442
Coordinates   400610..402598 (+) Length   662 a.a.
NCBI ID   WP_000610426.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 395610..407598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS02135 - 397228..397968 (-) 741 WP_001096336.1 amino acid ABC transporter ATP-binding protein -
  EJF26_RS02140 - 397968..399416 (-) 1449 WP_000726980.1 amino acid ABC transporter substrate-binding protein/permease -
  EJF26_RS02145 - 399580..400533 (+) 954 WP_000792129.1 CPBP family intramembrane glutamic endopeptidase -
  EJF26_RS02150 uvrB 400610..402598 (+) 1989 WP_000610426.1 excinuclease ABC subunit UvrB Machinery gene
  EJF26_RS02155 - 402611..404446 (+) 1836 WP_025168935.1 DUF2971 domain-containing protein -
  EJF26_RS02160 - 404510..405373 (+) 864 WP_000759010.1 hypothetical protein -
  EJF26_RS02165 - 405479..406021 (+) 543 WP_000798527.1 hypothetical protein -
  EJF26_RS02170 - 406045..406512 (+) 468 WP_000085289.1 8-oxo-dGTP diphosphatase -
  EJF26_RS02175 - 406509..407024 (-) 516 WP_000159156.1 transcription repressor NadR -
  EJF26_RS02180 - 407036..407536 (-) 501 WP_143888985.1 hypothetical protein -

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 75788.88 Da        Isoelectric Point: 4.5850

>NTDB_id=289737 EJF26_RS02150 WP_000610426.1 400610..402598(+) (uvrB) [Streptococcus oralis subsp. dentisani strain F0392]
MINRITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYG
EFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYA
DSVVSLRPGLEISRDKLLNDLVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVL
GEVDHLAIFPATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTNGVENYSRHMDG
RSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYENEQTETVIEQIIRPTGLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYM
HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADS
MTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLIAVTKAVAKEEDKEVDINSLNKQERKELVKKLEKQMQEAV
EVLDFELAAQIRDMMLEVKALD

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=289737 EJF26_RS02150 WP_000610426.1 400610..402598(+) (uvrB) [Streptococcus oralis subsp. dentisani strain F0392]
ATGATCAATCGAATTACAGACAATCAATTTAAACTAGTATCAAAATACCAACCTTCAGGAGATCAACCTCAAGCCATCGA
GCAGTTGGTTGATAATATCGAGGGTGGAGAAAAAGCTCAGATTCTGATGGGGGCGACAGGTACTGGGAAGACTTATACCA
TGAGTCAGGTCATTTCCAAAGTCAATAAACCCACTCTGGTCATTGCTCACAATAAGACTCTGGCGGGTCAGCTCTATGGA
GAATTCAAGGAATTTTTCCCTGAAAATGCTGTTGAGTATTTCGTATCCTACTATGATTATTACCAGCCAGAAGCCTATGT
CCCTTCTAGCGATACCTACATTGAGAAGGACAGTTCAGTCAATGACGAGATTGACAAGCTTCGCCACTCTGCGACTTCAG
CCCTTCTGGAGCGCAATGATGTCATCGTTGTGGCTTCTGTTTCTTGCATCTATGGTTTGGGTTCGCCAAAGGAATACGCT
GATAGCGTCGTTAGTCTCCGCCCAGGCCTTGAGATTTCTCGTGATAAACTTCTGAATGACTTGGTTGATATCCAGTTTGA
ACGCAATGATATTGATTTCCAACGGGGAAGATTTCGTGTGCGTGGGGATGTGGTAGAGATTTTCCCAGCTTCCCGTGATG
AACACGCTTTTCGAGTAGAGTTCTTCGGAGATGAAATTGACCGTATCCGAGAAGTTGAGGCTCTGACGGGTCAGGTATTG
GGAGAAGTGGACCATCTGGCGATTTTTCCAGCGACACACTTTGTGACCAATGACGATCACATGGAAGTTGCCATTGCCAA
GATTCAGGCGGAGTTGGAGGAGCAGTTAGCTGTCTTTGAAAAGGAAGGTAAACTGCTAGAAGCCCAGCGTTTGAAACAGC
GCACAGAGTATGATATTGAGATGTTACGTGAGATGGGCTATACCAACGGTGTTGAAAACTACTCTCGTCACATGGATGGT
CGAAGCGAAGGTGAGCCTCCTTATACGCTTCTTGACTTCTTCCCAGATGATTTCTTGATTATGATTGATGAAAGTCACAT
GACCATGGGGCAGATCAAGGGCATGTACAATGGAGACCGCTCTCGTAAGGAAATGCTGGTTAATTACGGTTTCCGTTTGC
CGTCAGCCTTGGACAATCGTCCTCTCCGCCGCGAAGAGTTTGAAAGCCATGTGCACCAGATTGTTTACGTTTCAGCAACA
CCTGGTGACTATGAAAATGAACAGACCGAGACAGTGATCGAGCAAATCATTCGTCCGACAGGGCTTTTGGATCCTGAAGT
GGAAGTCCGTCCGACTATGGGACAGATTGATGACCTCTTAGGTGAAATCAATGCCCGTGTTGAAAAGAATGAACGAACCT
TTATTACCACCTTGACCAAGAAAATGGCAGAAGACCTGACTGACTACTTTAAAGAAATGGGCATCAAGGTCAAGTATATG
CACTCGGACATCAAGACATTGGAGAGGACGGAGATTATCCGTGACCTACGCTTGGGTGTCTTTGATGTCTTGGTCGGAAT
CAATTTGCTCCGTGAAGGGATTGACGTACCCGAAGTAAGTTTGGTTGCTATTCTAGATGCTGACAAGGAAGGTTTCCTTC
GTAACGAACGTGGCCTCATCCAGACCATTGGACGTGCTGCCCGTAATAGCGAAGGGCATGTCATCATGTATGCGGACAGC
ATGACTCAGTCTATGCAACGTGCTATTGATGAGACGGCCCGCCGTCGGAAAATCCAGATGGCTTATAATGAAGAACATGG
TATCGTTCCACAAACCATTAAGAAGGAAATCCGTGACCTGATTGCCGTAACTAAGGCAGTTGCCAAGGAAGAGGACAAGG
AAGTCGATATCAATAGCCTTAACAAACAAGAGCGCAAAGAACTCGTCAAGAAACTTGAAAAACAAATGCAAGAAGCCGTC
GAAGTGCTTGACTTTGAACTGGCAGCTCAGATACGTGATATGATGCTAGAAGTGAAGGCGTTGGATTAG

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(626-660)

Type III restriction enzyme, res subunit (ResIII)

(17-143)

Helicase conserved C-terminal domain (Helicase_C)

(443-549)

Ultra-violet resistance protein B (UvrB)

(556-598)

UvrB interaction domain (UvrB_inter)

(164-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

99.547

100

0.995
  uvrB Streptococcus pneumoniae D39

99.547

100

0.995
  uvrB Streptococcus pneumoniae TIGR4

99.396

100

0.994

Multiple sequence alignment