Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   DCO55_RS07435 Genome accession   NZ_CP029053
Coordinates   1436817..1437998 (+) Length   393 a.a.
NCBI ID   WP_002868229.1    Uniprot ID   A0AB36G5F3
Organism   Campylobacter jejuni strain c021     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1431817..1442998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCO55_RS07410 (DCO55_07540) ctsR 1432378..1432689 (+) 312 WP_002880445.1 hypothetical protein Machinery gene
  DCO55_RS07415 (DCO55_07545) ctsD 1432667..1434079 (+) 1413 WP_002880444.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  DCO55_RS07420 (DCO55_07550) ctsP 1434072..1434680 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  DCO55_RS07425 (DCO55_07555) ctsX 1434684..1435271 (+) 588 WP_002851370.1 membrane protein Machinery gene
  DCO55_RS07430 (DCO55_07560) ctsE 1435261..1436820 (+) 1560 WP_167843238.1 GspE/PulE family protein Machinery gene
  DCO55_RS07435 (DCO55_07565) ctsF 1436817..1437998 (+) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  DCO55_RS07440 (DCO55_07570) - 1437991..1438755 (-) 765 WP_002855821.1 TSUP family transporter -
  DCO55_RS07445 (DCO55_07575) - 1438759..1439523 (-) 765 WP_002877433.1 TIGR02757 family protein -
  DCO55_RS07450 (DCO55_07580) flgK 1439540..1441366 (-) 1827 WP_253683964.1 flagellar hook-associated protein FlgK -
  DCO55_RS07455 (DCO55_07585) - 1441376..1441810 (-) 435 WP_002826016.1 flagellar protein FlgN -
  DCO55_RS07460 (DCO55_07590) flgM 1441853..1442050 (-) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  DCO55_RS07465 (DCO55_07595) - 1442113..1442454 (-) 342 WP_002784057.1 hypothetical protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45730.33 Da        Isoelectric Point: 9.0938

>NTDB_id=289728 DCO55_RS07435 WP_002868229.1 1436817..1437998(+) (ctsF) [Campylobacter jejuni strain c021]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=289728 DCO55_RS07435 WP_002868229.1 1436817..1437998(+) (ctsF) [Campylobacter jejuni strain c021]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACACATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGGAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987

Multiple sequence alignment