Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EJF26_RS00960 Genome accession   NZ_CP034442
Coordinates   180622..181092 (+) Length   156 a.a.
NCBI ID   WP_000609591.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 175622..186092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS00935 - 175930..176406 (+) 477 WP_000776854.1 DUF5590 domain-containing protein -
  EJF26_RS00940 - 176416..177594 (+) 1179 WP_000777445.1 pyridoxal phosphate-dependent aminotransferase -
  EJF26_RS00945 asnS 177747..179090 (+) 1344 WP_000167134.1 asparagine--tRNA ligase -
  EJF26_RS00950 - 179124..180029 (-) 906 Protein_178 IS30 family transposase -
  EJF26_RS00955 rpsF 180320..180610 (+) 291 WP_001151782.1 30S ribosomal protein S6 -
  EJF26_RS00960 ssb 180622..181092 (+) 471 WP_000609591.1 single-stranded DNA-binding protein SsbA Machinery gene
  EJF26_RS00965 rpsR 181124..181363 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  EJF26_RS00970 - 181636..182145 (+) 510 WP_000679033.1 GNAT family N-acetyltransferase -
  EJF26_RS00975 - 182227..183627 (+) 1401 WP_000338995.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  EJF26_RS00980 - 183629..183988 (+) 360 WP_000689617.1 S1 RNA-binding domain-containing protein -
  EJF26_RS00985 - 184022..184768 (+) 747 WP_000392505.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  EJF26_RS00990 - 184758..185042 (+) 285 WP_000349634.1 GIY-YIG nuclease family protein -
  EJF26_RS00995 - 185128..186063 (+) 936 WP_000036038.1 manganese-dependent inorganic pyrophosphatase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17367.25 Da        Isoelectric Point: 4.9057

>NTDB_id=289728 EJF26_RS00960 WP_000609591.1 180622..181092(+) (ssb) [Streptococcus oralis subsp. dentisani strain F0392]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGITGRIQTR
SYDNQQGQRIYVTEVVADNFQMLESRSVREGHTGGAYSAPTASYTAPTQSVPDFSRDENPFGATNPLDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=289728 EJF26_RS00960 WP_000609591.1 180622..181092(+) (ssb) [Streptococcus oralis subsp. dentisani strain F0392]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTCAAGAGTCAAAATGGCGAACGTGAGGCTGATTTCATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCTCTTATCGGGATCACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTATCTACGTAACAGAAGTCGTGGCTGACAATTTCCAAATGTTGGAAAGCCGTAG
CGTGCGTGAAGGACATACAGGTGGGGCTTATTCTGCACCAACTGCTAGTTATACAGCACCTACACAATCAGTACCAGACT
TTTCACGTGATGAAAATCCATTTGGAGCAACCAATCCATTGGATATTTCGGATGATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

54.118

100

0.59
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.488

100

0.59
  ssbB/cilA Streptococcus pneumoniae TIGR4

50.427

75

0.378
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

69.872

0.378
  ssbB/cilA Streptococcus pneumoniae R6

49.573

75

0.372
  ssbB/cilA Streptococcus mitis SK321

49.573

75

0.372
  ssbB/cilA Streptococcus mitis NCTC 12261

49.573

75

0.372
  ssbB/cilA Streptococcus pneumoniae Rx1

49.573

75

0.372
  ssbB/cilA Streptococcus pneumoniae D39

49.573

75

0.372
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.717

67.949

0.372

Multiple sequence alignment