Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   DCO55_RS07410 Genome accession   NZ_CP029053
Coordinates   1432378..1432689 (+) Length   103 a.a.
NCBI ID   WP_002880445.1    Uniprot ID   -
Organism   Campylobacter jejuni strain c021     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1427378..1437689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCO55_RS07400 (DCO55_07530) - 1428060..1428701 (+) 642 WP_052797933.1 HAD family hydrolase -
  DCO55_RS07405 (DCO55_07535) nifJ 1428794..1432354 (+) 3561 WP_002880446.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  DCO55_RS07410 (DCO55_07540) ctsR 1432378..1432689 (+) 312 WP_002880445.1 hypothetical protein Machinery gene
  DCO55_RS07415 (DCO55_07545) ctsD 1432667..1434079 (+) 1413 WP_002880444.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  DCO55_RS07420 (DCO55_07550) ctsP 1434072..1434680 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  DCO55_RS07425 (DCO55_07555) ctsX 1434684..1435271 (+) 588 WP_002851370.1 membrane protein Machinery gene
  DCO55_RS07430 (DCO55_07560) ctsE 1435261..1436820 (+) 1560 WP_167843238.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12450.33 Da        Isoelectric Point: 5.7333

>NTDB_id=289723 DCO55_RS07410 WP_002880445.1 1432378..1432689(+) (ctsR) [Campylobacter jejuni strain c021]
MCFSTLFAQDNFEEYFKLIDKENRIDFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=289723 DCO55_RS07410 WP_002880445.1 1432378..1432689(+) (ctsR) [Campylobacter jejuni strain c021]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAGATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

98.058

100

0.981

Multiple sequence alignment