Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   DCO55_RS07415 Genome accession   NZ_CP029053
Coordinates   1432667..1434079 (+) Length   470 a.a.
NCBI ID   WP_002880444.1    Uniprot ID   -
Organism   Campylobacter jejuni strain c021     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1427667..1439079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCO55_RS07400 (DCO55_07530) - 1428060..1428701 (+) 642 WP_052797933.1 HAD family hydrolase -
  DCO55_RS07405 (DCO55_07535) nifJ 1428794..1432354 (+) 3561 WP_002880446.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  DCO55_RS07410 (DCO55_07540) ctsR 1432378..1432689 (+) 312 WP_002880445.1 hypothetical protein Machinery gene
  DCO55_RS07415 (DCO55_07545) ctsD 1432667..1434079 (+) 1413 WP_002880444.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  DCO55_RS07420 (DCO55_07550) ctsP 1434072..1434680 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  DCO55_RS07425 (DCO55_07555) ctsX 1434684..1435271 (+) 588 WP_002851370.1 membrane protein Machinery gene
  DCO55_RS07430 (DCO55_07560) ctsE 1435261..1436820 (+) 1560 WP_167843238.1 GspE/PulE family protein Machinery gene
  DCO55_RS07435 (DCO55_07565) ctsF 1436817..1437998 (+) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  DCO55_RS07440 (DCO55_07570) - 1437991..1438755 (-) 765 WP_002855821.1 TSUP family transporter -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 53011.54 Da        Isoelectric Point: 6.6156

>NTDB_id=289724 DCO55_RS07415 WP_002880444.1 1432667..1434079(+) (ctsD) [Campylobacter jejuni strain c021]
MIRLILINILCCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLETLQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=289724 DCO55_RS07415 WP_002880444.1 1432667..1434079(+) (ctsD) [Campylobacter jejuni strain c021]
ATGATAAGATTAATATTAATTAACATTCTTTGTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAACGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTCAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAACATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTGGACGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGATGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAGCCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCACAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AACTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGCGATACTATAAATTATCAAGTTAAAGAAAGCTCTAAA
GGTACTGAAAATGGGACTACTGTTAGTGAAAGTTATAATAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTTAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATCGTTTTTATTATCACTCCAAGTATAGTAG
ATAGCGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(281-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

99.362

100

0.994

Multiple sequence alignment