Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | DDE72_RS05000 | Genome accession | NZ_CP029034 |
| Coordinates | 933606..933941 (-) | Length | 111 a.a. |
| NCBI ID | WP_003153104.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain LDO2 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 928606..938941
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DDE72_RS04950 (DDE72_04950) | comGC | 928838..929104 (+) | 267 | WP_042635730.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DDE72_RS04955 (DDE72_04955) | comGD | 929094..929531 (+) | 438 | WP_007612572.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| DDE72_RS04960 (DDE72_04960) | comGE | 929515..929829 (+) | 315 | WP_032874016.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| DDE72_RS04965 (DDE72_04965) | comGF | 929774..930238 (+) | 465 | WP_223813077.1 | competence type IV pilus minor pilin ComGF | - |
| DDE72_RS04970 (DDE72_04970) | comGG | 930239..930616 (+) | 378 | WP_032874019.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| DDE72_RS04975 (DDE72_04975) | - | 930673..930852 (+) | 180 | WP_022552966.1 | YqzE family protein | - |
| DDE72_RS04980 (DDE72_04980) | - | 930893..931222 (-) | 330 | WP_032874021.1 | DUF3889 domain-containing protein | - |
| DDE72_RS04985 (DDE72_04985) | tapA | 931481..932152 (+) | 672 | WP_032874023.1 | amyloid fiber anchoring/assembly protein TapA | - |
| DDE72_RS04990 (DDE72_04990) | - | 932124..932708 (+) | 585 | WP_032874025.1 | signal peptidase I | - |
| DDE72_RS04995 (DDE72_04995) | - | 932773..933558 (+) | 786 | WP_032874027.1 | TasA family protein | - |
| DDE72_RS05000 (DDE72_05000) | sinR | 933606..933941 (-) | 336 | WP_003153104.1 | transcriptional regulator SinR | Regulator |
| DDE72_RS05005 (DDE72_05005) | sinI | 933975..934148 (-) | 174 | WP_032874029.1 | anti-repressor SinI family protein | Regulator |
| DDE72_RS05010 (DDE72_05010) | - | 934325..935119 (-) | 795 | WP_007612541.1 | YqhG family protein | - |
| DDE72_RS05015 (DDE72_05015) | - | 935141..936811 (-) | 1671 | WP_032874031.1 | SNF2-related protein | - |
| DDE72_RS05020 (DDE72_05020) | gcvT | 937234..938334 (+) | 1101 | WP_032874033.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12972.64 Da Isoelectric Point: 7.2023
>NTDB_id=289498 DDE72_RS05000 WP_003153104.1 933606..933941(-) (sinR) [Bacillus velezensis strain LDO2]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=289498 DDE72_RS05000 WP_003153104.1 933606..933941(-) (sinR) [Bacillus velezensis strain LDO2]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
99.099 |
100 |
0.991 |