Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   EIP87_RS28130 Genome accession   NZ_CP034354
Coordinates   5850894..5852870 (+) Length   658 a.a.
NCBI ID   WP_028690943.1    Uniprot ID   A0ABM9KWH3
Organism   Pseudomonas aeruginosa strain IMP-13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5845894..5857870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EIP87_RS28105 (EIP87_28105) - 5847464..5848405 (-) 942 WP_028698648.1 LysR family transcriptional regulator -
  EIP87_RS28115 (EIP87_28115) - 5848854..5849834 (+) 981 WP_024086516.1 IS5-like element ISPa26 family transposase -
  EIP87_RS28120 (EIP87_28120) - 5850087..5850518 (+) 432 WP_023835768.1 DUF488 domain-containing protein -
  EIP87_RS28130 (EIP87_28130) uvrB 5850894..5852870 (+) 1977 WP_028690943.1 excinuclease ABC subunit UvrB Machinery gene
  EIP87_RS28135 (EIP87_28135) - 5853021..5853926 (-) 906 WP_023103881.1 LysR family transcriptional regulator -
  EIP87_RS28140 (EIP87_28140) - 5854081..5854488 (+) 408 WP_023103882.1 ketosteroid isomerase-related protein -
  EIP87_RS28145 (EIP87_28145) - 5854490..5855098 (+) 609 WP_028690944.1 GNAT family N-acetyltransferase -
  EIP87_RS28150 (EIP87_28150) - 5855095..5855985 (+) 891 WP_028690945.1 carbon-nitrogen hydrolase family protein -
  EIP87_RS28155 (EIP87_28155) frmR 5856268..5856543 (+) 276 WP_007182548.1 formaldehyde-responsive transcriptional repressor FrmR -
  EIP87_RS28160 (EIP87_28160) - 5856603..5857712 (+) 1110 WP_011871467.1 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 74391.55 Da        Isoelectric Point: 5.1668

>NTDB_id=289231 EIP87_RS28130 WP_028690943.1 5850894..5852870(+) (uvrB) [Pseudomonas aeruginosa strain IMP-13]
MSTGMFILHSNYTPAGDQPEAIARLLSDIEEGATHQTLKGITGSGKTFTMANVIHRLKRPTLILAPNKTLTAQLYSEMKH
FFPENAVEYFVSYYDYFQPEIYMPGTDRFIPKDSAINDHLERLRLSTTKSLIERRDVIVVASVSSIYGLGDPDAYRALQI
ALSPGVKLNQRELIRRLALLQYDRTERTLKRATFRVQGDVIDIFPADSEYRAVRVELLDDTVASVQWMDPVTGKTLGEID
HYLVSPKTLFAPPTNKIDSASKKILADMEERVAELNRNNRLVEANRLYERITHDVEMMREVGYCSGMENYSCYFSDRDAA
SPPITLLDYLPKDGLLFVDESHVMVPQISAMYRGDQARKDTLIDYGFRLPSSKNNRPLNFDEFEKVKPQTIFVSATPGDY
ELRVSKGRVVEQVIRPTGLLDPKVEVRKADGYIDDLLAEISKCVKRKNRVLVTTLTKVSAEELTDFLTDNGIRARYMHSD
IKAEDRVEIINGLRAGEFDVLIGISLLREGLDIPEASLVAILDADRAGFLRSAHALIQMIGRVARNENGKAILYADAVTP
AMKQAIDETNRRRQLQIAFNEENGISPASSVRKLAGEETNTEEPTVHSEAFCENLSDLCDQITAKEQQLLEFTDTGDEQR
VEDIRHQLDGLYRQFIYI

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=289231 EIP87_RS28130 WP_028690943.1 5850894..5852870(+) (uvrB) [Pseudomonas aeruginosa strain IMP-13]
ATGTCAACCGGTATGTTTATTCTGCACTCCAACTATACGCCGGCGGGGGACCAGCCAGAGGCGATCGCGCGGCTGCTGTC
GGACATAGAAGAAGGTGCGACGCACCAGACGCTGAAAGGTATCACCGGCTCAGGTAAGACCTTCACCATGGCCAATGTGA
TTCATCGTCTGAAGCGGCCCACGTTGATCTTGGCTCCCAACAAGACGTTGACCGCGCAGCTCTATAGTGAAATGAAGCAC
TTCTTTCCTGAGAATGCGGTCGAGTACTTCGTTTCGTATTACGACTATTTTCAGCCCGAGATCTATATGCCGGGCACCGA
TCGTTTCATACCGAAGGACTCGGCCATCAATGACCACCTTGAGCGCCTGCGCCTGTCCACGACCAAATCCTTGATTGAGC
GTCGTGACGTGATCGTCGTCGCTTCGGTGTCTTCAATCTACGGCCTGGGTGATCCAGATGCATATCGAGCGCTACAGATC
GCTCTGTCCCCTGGGGTCAAACTAAACCAGAGAGAGCTAATTCGTCGCTTGGCTTTGCTGCAATATGATCGCACGGAGCG
TACGCTCAAGCGTGCAACGTTCCGCGTCCAAGGTGATGTGATTGACATTTTCCCCGCTGATTCCGAGTACAGGGCGGTTC
GGGTGGAACTGTTGGATGACACTGTTGCGTCTGTCCAATGGATGGACCCTGTTACTGGCAAGACGTTGGGAGAGATAGAC
CATTATTTGGTTTCGCCAAAAACGCTTTTCGCACCGCCCACGAACAAAATAGATTCTGCATCCAAAAAGATACTCGCTGA
TATGGAAGAGCGGGTTGCCGAGCTGAACAGGAATAATCGCTTGGTCGAGGCAAACAGACTGTACGAGCGGATCACGCATG
ACGTGGAAATGATGCGCGAGGTCGGCTATTGCTCGGGGATGGAGAATTATTCCTGCTACTTCAGCGACCGAGACGCAGCT
TCTCCTCCGATCACGTTGCTGGATTATTTGCCGAAAGACGGGCTGCTGTTCGTCGATGAATCTCATGTCATGGTGCCACA
GATATCCGCAATGTACCGGGGGGATCAGGCGCGCAAGGACACGCTGATCGATTACGGGTTCCGTTTGCCTTCATCGAAGA
ACAACCGGCCATTGAACTTTGACGAGTTCGAGAAGGTCAAGCCTCAGACCATCTTTGTTTCCGCTACTCCGGGCGACTAC
GAGCTGAGGGTGTCGAAAGGCAGGGTTGTCGAACAGGTTATCAGGCCAACGGGACTGCTTGACCCCAAGGTTGAAGTGCG
GAAAGCGGATGGATACATAGATGACCTGCTTGCCGAAATATCGAAGTGCGTGAAGAGAAAGAATCGAGTGCTTGTGACTA
CGCTGACGAAGGTCAGTGCAGAAGAGCTAACGGATTTCTTGACGGACAACGGGATTCGAGCGCGCTACATGCATTCGGAC
ATAAAAGCGGAGGATCGTGTTGAGATCATCAATGGCCTGCGCGCAGGAGAGTTCGATGTTTTGATTGGGATTAGTCTTTT
GCGCGAAGGGCTGGATATTCCAGAGGCATCATTGGTTGCCATTCTCGATGCAGACCGTGCAGGGTTCTTGCGTTCGGCCC
ATGCGCTCATTCAGATGATCGGTCGAGTCGCTCGGAATGAAAACGGCAAGGCGATCTTGTACGCCGACGCGGTGACGCCG
GCGATGAAGCAGGCGATCGATGAGACCAATAGGCGCAGGCAGCTTCAAATTGCCTTTAACGAGGAAAATGGGATTTCTCC
AGCCTCGTCTGTGCGAAAACTAGCAGGGGAAGAGACGAATACGGAGGAGCCCACCGTTCATTCCGAGGCTTTCTGCGAGA
ACTTGTCCGACCTTTGCGATCAGATCACTGCCAAGGAACAGCAGCTACTCGAATTTACCGATACCGGTGACGAGCAGCGC
GTCGAAGACATTCGTCATCAGTTGGATGGGTTGTACCGGCAATTCATTTACATCTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(435-546)

Type III restriction enzyme, res subunit (ResIII)

(17-100)

UvrB interaction domain (UvrB_inter)

(160-250)

Ultra-violet resistance protein B (UvrB)

(553-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

52.292

89.514

0.468
  uvrB Streptococcus pneumoniae R6

52.292

89.514

0.468
  uvrB Streptococcus pneumoniae D39

52.292

89.514

0.468