Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DCE79_RS18310 Genome accession   NZ_CP029002
Coordinates   3722231..3722791 (-) Length   186 a.a.
NCBI ID   WP_108714371.1    Uniprot ID   A0A2S1H685
Organism   Lysinibacillus sp. 2017     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3717231..3727791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCE79_RS18290 (DCE79_18290) rplI 3718326..3718772 (-) 447 WP_108714367.1 50S ribosomal protein L9 -
  DCE79_RS18295 (DCE79_18295) - 3718769..3720742 (-) 1974 WP_108714368.1 DHH family phosphoesterase -
  DCE79_RS18300 (DCE79_18300) - 3720756..3721703 (-) 948 WP_108714369.1 YybS family protein -
  DCE79_RS18305 (DCE79_18305) rpsR 3721948..3722187 (-) 240 WP_199912349.1 30S ribosomal protein S18 -
  DCE79_RS18310 (DCE79_18310) ssbA 3722231..3722791 (-) 561 WP_108714371.1 single-stranded DNA-binding protein Machinery gene
  DCE79_RS18315 (DCE79_18315) rpsF 3722832..3723122 (-) 291 WP_108714372.1 30S ribosomal protein S6 -
  DCE79_RS18320 (DCE79_18320) - 3723324..3723863 (+) 540 WP_108714373.1 DUF3267 domain-containing protein -
  DCE79_RS18325 (DCE79_18325) ychF 3724024..3725124 (-) 1101 WP_108714374.1 redox-regulated ATPase YchF -
  DCE79_RS18330 (DCE79_18330) - 3725225..3725422 (-) 198 WP_108714537.1 DUF951 domain-containing protein -
  DCE79_RS18335 (DCE79_18335) - 3725426..3726319 (-) 894 WP_234417296.1 mechanosensitive ion channel family protein -
  DCE79_RS18340 (DCE79_18340) yyaC 3726433..3727056 (+) 624 WP_108714376.1 spore protease YyaC -
  DCE79_RS18345 (DCE79_18345) - 3726973..3727680 (-) 708 WP_108714377.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20400.41 Da        Isoelectric Point: 4.7815

>NTDB_id=289198 DCE79_RS18310 WP_108714371.1 3722231..3722791(-) (ssbA) [Lysinibacillus sp. 2017]
MINRVVLVGRLTKDPELRYTPSGVPMARFTIAVNRTFSNQSGEREADFIGCIAWRKQAENLANFMKKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADAVQFLEPRGGAGTSQGMPNQQYGGGQNYGGQPSYNNQPNQQFGGAQPQESFGSNQQPPQNQQ
NYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=289198 DCE79_RS18310 WP_108714371.1 3722231..3722791(-) (ssbA) [Lysinibacillus sp. 2017]
ATGATTAACCGTGTTGTATTAGTCGGAAGACTTACAAAGGATCCAGAGCTTCGTTATACACCGAGTGGCGTTCCAATGGC
ACGTTTTACAATTGCTGTAAATCGTACTTTTTCGAACCAATCGGGTGAACGCGAAGCAGATTTCATAGGTTGTATTGCTT
GGAGAAAACAAGCTGAAAACTTAGCGAACTTCATGAAAAAAGGAAGTTTGATTGGTGTAGAGGGTCGTATTCAAACAGGT
AGCTATGAAGGACAAGATGGGAAGCGTGTATATACGACAGATGTTGTTGCAGATGCTGTGCAGTTCTTAGAACCACGCGG
AGGAGCAGGCACATCTCAAGGTATGCCAAACCAACAGTATGGTGGTGGACAAAATTATGGTGGGCAACCGTCATATAATA
ATCAACCAAACCAACAATTTGGGGGAGCACAACCACAGGAATCTTTTGGTTCTAATCAACAACCACCTCAAAATCAGCAA
AATTATACACGTGTAGATGAAGATCCATTTGCGAATAGCAAAGGACCTATTGAAGTGTCTGAGGACGATTTACCGTTCTA
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S1H685

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.527

100

0.575
  ssb Latilactobacillus sakei subsp. sakei 23K

51.064

100

0.516

Multiple sequence alignment