Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   D1J63_RS27835 Genome accession   NZ_CP034353
Coordinates   6179044..6181182 (+) Length   712 a.a.
NCBI ID   WP_125632619.1    Uniprot ID   -
Organism   Streptomyces sp. KPB2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6174044..6186182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J63_RS27810 (D1J63_27810) - 6174781..6175689 (-) 909 WP_164713003.1 pseudouridine-5'-phosphate glycosidase -
  D1J63_RS27815 (D1J63_27815) - 6175825..6176253 (+) 429 WP_125632610.1 VOC family protein -
  D1J63_RS27820 (D1J63_27820) - 6176286..6176840 (-) 555 WP_125632612.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  D1J63_RS27825 (D1J63_27825) - 6176965..6177834 (-) 870 WP_125632615.1 glycerophosphodiester phosphodiesterase family protein -
  D1J63_RS27830 (D1J63_27830) - 6178125..6179003 (+) 879 WP_125632617.1 MHYT domain-containing protein -
  D1J63_RS27835 (D1J63_27835) uvrB 6179044..6181182 (+) 2139 WP_125632619.1 excinuclease ABC subunit UvrB Machinery gene
  D1J63_RS27840 (D1J63_27840) - 6181326..6181904 (+) 579 WP_030185838.1 TerD family protein -
  D1J63_RS27845 (D1J63_27845) - 6182014..6184056 (+) 2043 WP_125632621.1 TerD family protein -
  D1J63_RS27850 (D1J63_27850) - 6184307..6185308 (+) 1002 WP_125632623.1 TerC/Alx family metal homeostasis membrane protein -

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 79801.41 Da        Isoelectric Point: 4.8163

>NTDB_id=289117 D1J63_RS27835 WP_125632619.1 6179044..6181182(+) (uvrB) [Streptomyces sp. KPB2]
MRPVSQIERTVAPFEVVSPYQPSGDQPAAIAELARRVQAGEKDVVLLGATGTGKSATTAWMIEKVQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLRVGEEHDRDELLRRFVDIQYTRNDMAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPVTG
EIISDDQQLYVFPASHYVAGPERLERAVNDIEKELAERLTELEKQGKLLEAQRLRMRTTYDIEMLRQIGSCSGVENYSMH
FDGRSPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYL
SATPGAYELSRADGAVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRMRTEKDERVLVTTLTKKMAEDLTDYFVELGIQV
RYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMEKAIDETNRRREKQIAFNKANGIDPQPLRKKINDIVAQIAREDVDTEQLLGSGYRQAKEGKAAKAPVPALGG
QTAGGTKAAKGRAKETAVTDRPAAELAGQIEDLTTRMRAAAADLQFEIAARLRDEVSEMKKELRQMKEAGLA

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=289117 D1J63_RS27835 WP_125632619.1 6179044..6181182(+) (uvrB) [Streptomyces sp. KPB2]
ATGCGGCCCGTTTCCCAGATCGAACGCACGGTGGCGCCCTTCGAGGTCGTCAGCCCCTACCAGCCCAGCGGCGACCAGCC
GGCGGCCATCGCCGAGCTGGCCCGGCGCGTCCAGGCAGGCGAGAAGGACGTCGTCCTGCTCGGCGCCACCGGCACCGGCA
AGTCCGCCACCACCGCGTGGATGATCGAGAAGGTCCAGCGCCCCACCCTGGTCATGGCGCCGAACAAGACCCTGGCCGCC
CAGCTGGCGAACGAATTCCGCGAGCTCCTGCCGAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCCTACGTCCCCCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTGGAGCGCCTGCGCCACT
CCGCCACCAACTCGCTGCTCACCCGCCGCGACGTCGTCGTGGTCGCCTCCGTCTCCTGCATCTACGGCCTCGGCACCCCG
CAGGAGTACGTGGACCGCATGGTCCCCCTCCGGGTCGGCGAGGAGCACGACCGGGACGAGCTGCTGCGCCGCTTCGTCGA
CATCCAGTACACGCGCAACGACATGGCCTTCACCCGCGGCACCTTCCGGGTGCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTGGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCCCTGTCCACGCTCCACCCCGTCACCGGC
GAGATCATCAGCGACGACCAGCAGCTCTACGTCTTCCCGGCCTCCCACTACGTCGCCGGCCCCGAGCGCCTGGAGCGGGC
GGTCAACGACATCGAGAAGGAGCTGGCCGAGCGCCTGACCGAGCTGGAGAAGCAGGGCAAGCTCCTGGAGGCCCAGCGGC
TGCGGATGCGCACCACGTACGACATCGAGATGCTCCGCCAGATCGGCTCCTGCTCCGGCGTGGAGAACTACTCGATGCAC
TTCGACGGCCGCTCGCCCGGCTCCCCGCCGAACACCCTCCTCGACTACTTCCCGGACGACTTCCTGCTCGTCATCGACGA
GTCGCACGTCACCGTGCCGCAGATCGGCGCGATGTACGAGGGCGACGCCTCCCGCAAGCGGACCCTGGTCGACCACGGCT
TCCGGCTGCCCTCCGCGCTCGACAACCGCCCGCTGAAGTGGGAGGAGTTCCAGGAGCGCATCGGGCAGACCGTGTACCTG
TCGGCGACCCCGGGCGCCTACGAGCTCTCCCGGGCGGACGGCGCCGTCGAGCAGATCATCCGCCCCACCGGCCTCGTCGA
CCCCGAAGTCGTCGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCATGCGCACCGAGAAGGACG
AGCGGGTCCTGGTCACCACCCTCACCAAGAAGATGGCCGAGGACCTCACCGACTACTTCGTGGAGCTCGGCATCCAGGTC
CGCTACCTCCACAGCGACGTCGACACCCTCCGCCGCGTCGAGCTGCTGCGCGAGCTCCGCGCCGGCGAGTACGACGTCCT
GGTCGGCATCAACCTGCTGCGCGAGGGCCTGGACCTGCCCGAGGTGTCCCTGGTGGCGATCCTCGACGCCGACAAGGAGG
GCTTCCTGCGCTCCGGCACCTCCCTGATCCAGACCATCGGCCGCGCGGCGCGCAACGTCTCCGGCCAGGTCCACATGTAC
GCGGACAAGATCACGCCCGCGATGGAGAAGGCCATCGACGAGACCAACCGCCGCCGCGAGAAGCAGATCGCGTTCAACAA
GGCGAACGGCATCGATCCCCAGCCGCTCCGCAAGAAGATCAACGACATCGTCGCCCAGATCGCCCGCGAGGACGTCGACA
CCGAGCAGCTCCTCGGCTCGGGCTACCGCCAGGCGAAGGAGGGCAAGGCCGCCAAGGCCCCCGTGCCCGCGCTGGGCGGC
CAGACGGCCGGCGGGACCAAGGCGGCCAAGGGCCGGGCCAAGGAGACGGCGGTCACCGACCGCCCGGCGGCGGAGCTGGC
CGGACAGATCGAGGACCTGACCACCCGGATGCGGGCCGCCGCGGCCGACCTCCAGTTCGAGATCGCGGCCCGACTGCGCG
ACGAGGTCTCCGAGATGAAGAAGGAACTGCGCCAGATGAAGGAGGCGGGCCTGGCCTGA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(169-257)

Helicase conserved C-terminal domain (Helicase_C)

(446-551)

UvrB/uvrC motif (UVR)

(669-701)

Ultra-violet resistance protein B (UvrB)

(559-600)

Type III restriction enzyme, res subunit (ResIII)

(25-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.122

96.629

0.552
  uvrB Streptococcus pneumoniae R6

57.122

96.629

0.552
  uvrB Streptococcus pneumoniae D39

57.122

96.629

0.552