Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D1J63_RS10020 Genome accession   NZ_CP034353
Coordinates   2346558..2348189 (-) Length   543 a.a.
NCBI ID   WP_125628630.1    Uniprot ID   -
Organism   Streptomyces sp. KPB2     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2341558..2353189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J63_RS10000 (D1J63_10000) - 2342276..2343046 (+) 771 WP_315979016.1 M23 family metallopeptidase -
  D1J63_RS10005 (D1J63_10005) - 2343000..2343557 (-) 558 WP_061442315.1 TetR/AcrR family transcriptional regulator -
  D1J63_RS10010 (D1J63_10010) whiG 2343685..2344527 (-) 843 WP_061442316.1 RNA polymerase sigma factor WhiG -
  D1J63_RS10015 (D1J63_10015) dprA 2344807..2345937 (-) 1131 WP_125635354.1 DNA-processing protein DprA -
  D1J63_RS10020 (D1J63_10020) comM 2346558..2348189 (-) 1632 WP_125628630.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D1J63_RS10025 (D1J63_10025) - 2348189..2348551 (-) 363 WP_164712779.1 YraN family protein -
  D1J63_RS10030 (D1J63_10030) - 2348640..2348948 (-) 309 WP_003965949.1 DUF2469 domain-containing protein -
  D1J63_RS10035 (D1J63_10035) - 2349005..2349535 (-) 531 WP_125628632.1 NUDIX hydrolase -
  D1J63_RS10040 (D1J63_10040) lepB 2349525..2350301 (-) 777 WP_125628633.1 signal peptidase I -
  D1J63_RS10045 (D1J63_10045) lepB 2350406..2351422 (-) 1017 WP_241235541.1 signal peptidase I -
  D1J63_RS10050 (D1J63_10050) lepB 2351316..2352395 (-) 1080 Protein_1982 signal peptidase I -
  D1J63_RS10055 (D1J63_10055) lepB 2352388..2353185 (-) 798 WP_176153599.1 signal peptidase I -

Sequence

Protein


Download         Length: 543 a.a.        Molecular weight: 56797.18 Da        Isoelectric Point: 7.2609

>NTDB_id=289071 D1J63_RS10020 WP_125628630.1 2346558..2348189(-) (comM) [Streptomyces sp. KPB2]
MGFARTCSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLTESRDRVRAAVVNSGAEWPQKKLTVGLSPASVPKSGSG
FDLAVAASVLGAAERIDPRVLADIVMIGELGLDGRVRPVRGILPAVLAAAEAGYEQVVVPECAAAEASLVPGVSVLGVRS
LRQLIAVLADEPVPEEDQEQAQQGRPDPLLAGLRMPGTGAATGMRSMGAAQHDHGHDLADVVGQESARTAVEVAAAGRHH
LFLEGPPGAGKTMLAERLPAILPRLCRAESLEVTAVHSVAGLLPPGKPLIDVAPYCAPHHSATMQALVGGGPGIARPGAV
SLAHRGVLFLDETPEFSSHALDALRQPLEAGHVVIARSAGVVRFPARFLMVLAANPCPCGRFSQTDELCECPPSAIRRYQ
ARLSGPLLDRVDLRVEVDRVTRSQLAGNGPRGDATATVADRVRAARERAATRLAGTPWRSNSEVPGRELRSRWRAAPGAL
DEAERSLERGVLTARGLDRVLRVAWTVADLVGHDRPGPRDVALALQLRTGVPRGVPMALGALT

Nucleotide


Download         Length: 1632 bp        

>NTDB_id=289071 D1J63_RS10020 WP_125628630.1 2346558..2348189(-) (comM) [Streptomyces sp. KPB2]
ATGGGGTTCGCGCGTACGTGCTCGGTGGCGCTCGTCGGCGTCGAGGGCGTGGTGGTGGAGGTCCAGGCCGACCTGGAGCC
GGGCGTGGCCGCCTTCACGCTGGTGGGACTGCCGGACAAGAGCCTCACGGAGAGCCGGGACCGGGTGCGGGCGGCCGTGG
TCAACTCGGGTGCGGAATGGCCGCAGAAGAAGCTGACCGTGGGACTCAGCCCGGCCTCGGTGCCCAAGAGCGGCAGCGGC
TTCGACCTCGCCGTCGCCGCGAGCGTCCTGGGCGCCGCGGAGCGGATCGACCCGCGGGTGCTCGCCGACATCGTGATGAT
CGGAGAGCTGGGACTGGACGGCCGGGTGCGACCGGTGCGCGGCATCCTGCCGGCGGTCCTGGCCGCGGCCGAGGCCGGCT
ACGAACAGGTGGTCGTGCCGGAGTGCGCCGCGGCCGAGGCGTCCCTCGTCCCGGGGGTGTCGGTGCTCGGCGTGCGCAGC
CTGCGCCAGCTGATCGCCGTCCTCGCCGACGAACCCGTGCCGGAGGAGGACCAGGAGCAGGCCCAGCAGGGCCGTCCCGA
CCCGCTCCTGGCCGGTCTGCGCATGCCCGGCACCGGCGCGGCCACCGGAATGCGCAGCATGGGAGCGGCCCAGCACGACC
ACGGCCACGACCTCGCCGACGTCGTCGGACAGGAGTCGGCGCGCACGGCGGTGGAGGTCGCCGCGGCCGGCCGCCACCAT
CTGTTCCTGGAAGGCCCGCCCGGCGCCGGCAAGACCATGCTCGCCGAACGGCTGCCCGCCATCCTGCCCCGGCTGTGCCG
TGCGGAGTCCCTCGAGGTCACCGCCGTGCACTCCGTGGCGGGGCTGCTGCCGCCGGGCAAGCCGCTGATCGACGTGGCCC
CCTACTGCGCTCCCCACCACTCCGCCACGATGCAGGCCCTCGTCGGCGGCGGCCCGGGCATCGCACGGCCGGGAGCCGTG
TCGCTGGCACACCGAGGGGTCCTGTTCCTGGACGAGACGCCGGAGTTCAGCAGCCACGCGCTGGACGCGTTGCGTCAGCC
GCTGGAGGCCGGGCACGTCGTCATCGCGCGCAGCGCGGGGGTGGTGCGCTTCCCGGCGCGGTTCCTGATGGTGCTCGCCG
CCAATCCCTGCCCCTGCGGGCGGTTCTCGCAGACCGACGAGTTGTGCGAGTGCCCGCCCTCGGCGATCCGCCGCTACCAG
GCCAGGCTGTCGGGGCCACTGCTCGACCGCGTCGACCTGCGGGTCGAGGTGGACCGGGTCACACGCAGCCAGCTGGCGGG
CAACGGCCCCCGGGGCGACGCCACCGCGACGGTCGCCGACCGGGTGCGCGCGGCCCGGGAGCGGGCGGCCACCCGCCTCG
CGGGCACCCCGTGGCGGTCGAACAGCGAGGTGCCCGGCAGGGAGCTGCGCAGCCGCTGGCGCGCCGCGCCCGGTGCGCTG
GACGAGGCGGAGCGCAGTCTGGAACGCGGTGTCCTGACCGCCCGCGGACTCGACCGCGTCCTGCGCGTCGCCTGGACCGT
CGCGGACCTCGTCGGTCACGACCGCCCCGGACCGAGGGACGTCGCCCTGGCCCTGCAACTGCGCACCGGGGTGCCGCGCG
GCGTCCCGATGGCCCTGGGAGCACTGACATGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(433-528)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(217-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.156

94.475

0.379
  comM Vibrio cholerae strain A1552

40.156

94.475

0.379
  comM Vibrio campbellii strain DS40M4

39.844

94.291

0.376
  comM Haemophilus influenzae Rd KW20

37.97

97.974

0.372
  comM Acinetobacter baylyi ADP1

38.627

93.923

0.363