Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   E2348C_RS15400 Genome accession   NC_011601
Coordinates   2967060..2967797 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O127:H6 str. E2348/69     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2962060..2972797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E2348C_RS15385 (E2348_C_2866) clpC 2962514..2965087 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  E2348C_RS15390 (E2348_C_2867) yfiH 2965217..2965948 (-) 732 WP_000040119.1 purine nucleoside phosphorylase YfiH -
  E2348C_RS15395 (E2348_C_2868) rluD 2965945..2966925 (-) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  E2348C_RS15400 (E2348_C_2869) comL 2967060..2967797 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  E2348C_RS15405 (E2348_C_2870) - 2967918..2968873 (+) 956 Protein_2992 IS4 family transposase -
  E2348C_RS15420 (E2348_C_2871) raiA 2969168..2969509 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  E2348C_RS28495 (E2348C_2872) pheL 2969613..2969660 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  E2348C_RS15425 (E2348_C_2873) pheA 2969759..2970919 (+) 1161 WP_000200108.1 bifunctional chorismate mutase/prephenate dehydratase -
  E2348C_RS15430 (E2348_C_2874) tyrA 2970962..2972083 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=28897 E2348C_RS15400 WP_000197686.1 2967060..2967797(+) (comL) [Escherichia coli O127:H6 str. E2348/69]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=28897 E2348C_RS15400 WP_000197686.1 2967060..2967797(+) (comL) [Escherichia coli O127:H6 str. E2348/69]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment