Detailed information NTG0028896

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: RBAM_RS16515
• Genome accession: NC_009725
• Coordinates: 3380584..3381747 (-)
• Length: 387 a.a.
• NCBI ID: WP_007407484.1
• Uniprot ID: A3KLC1
• Organism: Bacillus velezensis FZB42
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3375584..3386747

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RBAM_RS16485 (RBAM_032590)	-	3375849..3376268 (-)	420	WP_012118571.1	TIGR03826 family flagellar region protein	-
RBAM_RS16490 (RBAM_032600)	comFC	3376342..3377031 (-)	690	WP_197197403.1	phosphoribosyltransferase family protein	Machinery gene
RBAM_RS16495 (RBAM_032610)	-	3377037..3377321 (-)	285	WP_007407481.1	late competence development ComFB family protein	-
RBAM_RS16500 (RBAM_032620)	comFA	3377379..3378764 (-)	1386	WP_012118573.1	DEAD/DEAH box helicase	Machinery gene
RBAM_RS16505 (RBAM_032630)	-	3378872..3379720 (-)	849	WP_003151387.1	DegV family protein	-
RBAM_RS16510 (RBAM_032640)	degU	3379818..3380507 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
RBAM_RS16515 (RBAM_032650)	degS	3380584..3381747 (-)	1164	WP_007407484.1	two-component sensor histidine kinase DegS	Regulator
RBAM_RS16520 (RBAM_032660)	-	3381970..3382617 (+)	648	WP_007614107.1	YigZ family protein	-
RBAM_RS16525 (RBAM_032670)	-	3382622..3383842 (+)	1221	WP_012118574.1	LCP family protein	-
RBAM_RS16530 (RBAM_032680)	-	3383941..3385017 (-)	1077	WP_003151382.1	glycosyltransferase family 4 protein	-
RBAM_RS16535 (RBAM_032690)	tuaH	3385150..3386346 (-)	1197	WP_012118575.1	teichuronic acid biosynthesis protein TuaH	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 45014.78 Da
• Isoelectric Point: 6.8616

>NTDB_id=28896 RBAM_RS16515 WP_007407484.1 3380584..3381747(-) (degS) [Bacillus velezensis FZB42]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide

• Length: 1164 bp

>NTDB_id=28896 RBAM_RS16515 WP_007407484.1 3380584..3381747(-) (degS) [Bacillus velezensis FZB42]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTCGAAGAACTTAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAACAGCGTGAAAAGCAGCTGCGGGAGCGCAGGGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase (HisKA_3) (180-248)

3D structure

• AlphaFold DB: A3KLC1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	95.584	99.483	0.951