Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   RBAM_RS16500 Genome accession   NC_009725
Coordinates   3377379..3378764 (-) Length   461 a.a.
NCBI ID   WP_012118573.1    Uniprot ID   A7Z9B6
Organism   Bacillus velezensis FZB42     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3372379..3383764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBAM_RS16465 (RBAM_032550) flgL 3372554..3373471 (-) 918 WP_012118569.1 flagellar hook-associated protein FlgL -
  RBAM_RS16470 (RBAM_032560) flgK 3373483..3375000 (-) 1518 WP_012118570.1 flagellar hook-associated protein FlgK -
  RBAM_RS16475 (RBAM_032570) - 3375016..3375498 (-) 483 WP_003151394.1 flagellar protein FlgN -
  RBAM_RS16480 (RBAM_032580) flgM 3375513..3375779 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  RBAM_RS16485 (RBAM_032590) - 3375849..3376268 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  RBAM_RS16490 (RBAM_032600) comFC 3376342..3377031 (-) 690 WP_197197403.1 phosphoribosyltransferase family protein Machinery gene
  RBAM_RS16495 (RBAM_032610) - 3377037..3377321 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  RBAM_RS16500 (RBAM_032620) comFA 3377379..3378764 (-) 1386 WP_012118573.1 DEAD/DEAH box helicase Machinery gene
  RBAM_RS16505 (RBAM_032630) - 3378872..3379720 (-) 849 WP_003151387.1 DegV family protein -
  RBAM_RS16510 (RBAM_032640) degU 3379818..3380507 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RBAM_RS16515 (RBAM_032650) degS 3380584..3381747 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  RBAM_RS16520 (RBAM_032660) - 3381970..3382617 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52493.84 Da        Isoelectric Point: 10.2968

>NTDB_id=28894 RBAM_RS16500 WP_012118573.1 3377379..3378764(-) (comFA) [Bacillus velezensis FZB42]
MSEGASEFSEVRDFFFGRHLLRSEVPFSDHHIKRVTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVVMGRADELTSLYSWNQAHENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSHLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRNGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITSGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=28894 RBAM_RS16500 WP_012118573.1 3377379..3378764(-) (comFA) [Bacillus velezensis FZB42]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTTCGGCCGGCATTTATTGAGATCTGAGGTACCGTT
TTCAGATCATCACATCAAGCGTGTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCGTGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCATGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACATCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAAACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTCACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATCACAAGCGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(330-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z9B6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.174

99.783

0.62

Multiple sequence alignment