Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DCY11_RS00870 Genome accession   NZ_CP028960
Coordinates   172543..173010 (-) Length   155 a.a.
NCBI ID   WP_108680689.1    Uniprot ID   -
Organism   Methyloceanibacter sp. wino2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 167543..178010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCY11_RS00855 - 167857..168591 (+) 735 WP_159079710.1 Crp/Fnr family transcriptional regulator -
  DCY11_RS00860 gyrA 168632..171397 (-) 2766 WP_108680685.1 DNA gyrase subunit A -
  DCY11_RS00865 - 171923..172408 (+) 486 WP_108680687.1 bacterioferritin -
  DCY11_RS00870 ssb 172543..173010 (-) 468 WP_108680689.1 single-stranded DNA-binding protein Machinery gene
  DCY11_RS00875 - 173332..173943 (+) 612 WP_052464300.1 MAPEG family protein -
  DCY11_RS00880 - 173940..174500 (-) 561 WP_108680691.1 DUF2585 domain-containing protein -
  DCY11_RS00885 - 174605..176173 (+) 1569 WP_108680693.1 AAA family ATPase -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17075.94 Da        Isoelectric Point: 6.4889

>NTDB_id=288952 DCY11_RS00870 WP_108680689.1 172543..173010(-) (ssb) [Methyloceanibacter sp. wino2]
MAGSVNKVILIGNLGADPEVRHTQDGRPIVNLRLATTDSWRDKNSGERREKTEWHRVVIFSEGLARVAEQYLRKGSKVYV
EGSLQTRKWEDQSGQERYTTEVVLQGFNSTLTMLDGRQQGGGMSESGGGGGDFGRTKPLSGGGSFNKELDDEIPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=288952 DCY11_RS00870 WP_108680689.1 172543..173010(-) (ssb) [Methyloceanibacter sp. wino2]
ATGGCCGGATCGGTCAACAAAGTTATTCTCATCGGAAACCTCGGTGCCGACCCCGAAGTGCGCCACACCCAGGACGGGCG
CCCCATCGTCAACCTGCGTCTGGCGACCACCGACAGCTGGCGGGACAAGAATTCGGGCGAGCGCCGCGAGAAGACCGAAT
GGCACCGGGTGGTGATTTTCTCCGAAGGGCTTGCGCGGGTGGCCGAGCAGTATCTGCGCAAAGGCTCGAAGGTCTATGTC
GAGGGTTCGCTGCAGACCCGCAAATGGGAAGATCAGTCCGGTCAGGAGCGCTACACCACCGAGGTCGTGCTGCAGGGCTT
CAATTCGACGCTGACCATGCTCGACGGACGCCAGCAGGGCGGGGGCATGAGCGAGAGCGGCGGCGGTGGTGGCGATTTCG
GCCGCACCAAGCCCCTCAGCGGCGGCGGATCGTTCAACAAGGAACTGGACGACGAGATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

62.903

80

0.503
  ssb Glaesserella parasuis strain SC1401

58.462

83.871

0.49
  ssb Neisseria meningitidis MC58

42.336

88.387

0.374

Multiple sequence alignment