Detailed information NTG0288737

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DBX26_RS12335
• Genome accession: NZ_CP028943
• Coordinates: 2683825..2684694 (+)
• Length: 289 a.a.
• NCBI ID: WP_118119352.1
• Uniprot ID: -
• Organism: Vibrio sp. dhg
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2678825..2689694

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DBX26_RS12315 (DBX26_12305)	nadC	2679205..2680092 (+)	888	WP_020333946.1	carboxylating nicotinate-nucleotide diphosphorylase	-
DBX26_RS12320 (DBX26_12310)	-	2680351..2680818 (+)	468	WP_118119346.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
DBX26_RS12325 (DBX26_12315)	pilB	2680818..2682503 (+)	1686	WP_118119348.1	type IV-A pilus assembly ATPase PilB	Machinery gene
DBX26_RS12330 (DBX26_12320)	pilC	2682534..2683757 (+)	1224	WP_118119350.1	type II secretion system F family protein	Machinery gene
DBX26_RS12335 (DBX26_12325)	pilD	2683825..2684694 (+)	870	WP_118119352.1	A24 family peptidase	Machinery gene
DBX26_RS12340 (DBX26_12330)	coaE	2684695..2685309 (+)	615	WP_014232954.1	dephospho-CoA kinase	-
DBX26_RS12345 (DBX26_12335)	zapD	2685336..2686076 (+)	741	WP_014232955.1	cell division protein ZapD	-
DBX26_RS12350 (DBX26_12340)	yacG	2686150..2686344 (+)	195	WP_014232956.1	DNA gyrase inhibitor YacG	-
DBX26_RS12355 (DBX26_12345)	rplS	2686686..2687039 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
DBX26_RS12360 (DBX26_12350)	trmD	2687080..2687841 (-)	762	WP_014232957.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
DBX26_RS12365 (DBX26_12355)	rimM	2687869..2688417 (-)	549	WP_014232958.1	ribosome maturation factor RimM	-
DBX26_RS12370 (DBX26_12360)	rpsP	2688448..2688696 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32352.42 Da
• Isoelectric Point: 6.4398

>NTDB_id=288737 DBX26_RS12335 WP_118119352.1 2683825..2684694(+) (pilD) [Vibrio sp. dhg]
MEVFQYYPWLFVVFAVVFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYNIESPKDVLTLSIPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCSAPISARYPLVEILTAACSGYVAFHFGFSYFTIALIFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALFEVSPVSLQDAVIGTIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQALPMIILLSSIVGV
IFGIIQLRLQKKGIEKAFPFGPYLAIAGWVSLLWGDQILNWYFTSILGA

Nucleotide

• Length: 870 bp

>NTDB_id=288737 DBX26_RS12335 WP_118119352.1 2683825..2684694(+) (pilD) [Vibrio sp. dhg]
ATGGAAGTATTTCAGTACTACCCATGGTTATTCGTTGTATTCGCCGTGGTTTTTGGTTTGATCGTGGGAAGTTTTCTCAA
TGTCGTTATCTATCGACTTCCAAAAATCATGGAGCTGGAATGGCGCCGTGAATGTGCTGAGTCTTTTCCTGAATACAATA
TTGAATCACCTAAAGACGTACTCACATTAAGTATCCCCCGCTCCTCTTGCCAACAGTGCGGTACTCCGATTCGCATTCGC
GATAACATTCCAGTTATCAGTTGGCTACTTCTAAAAGGTAAATGCCACAACTGTAGCGCCCCGATCAGCGCCAGATACCC
ACTTGTAGAAATACTGACGGCAGCCTGCTCTGGCTATGTTGCGTTTCATTTTGGATTCAGCTATTTCACTATTGCGCTAA
TATTCTTTACTTTCATTCTGATCGCAGCGACGTTTATCGATCTCGATACCATGCTGCTGCCCGATCAATTAACATTGCCA
TTAACTTGGGCTGGCATTGCTCTAGCATTGTTCGAAGTCAGTCCTGTTAGTCTGCAAGATGCCGTGATCGGTACAATCGC
TGGCTATTTATGTCTCTGGTCTGTTTATTGGGGCTTTAAGTTGCTTACTGGCAAGGAAGGCATGGGCTATGGCGACTTTA
AGCTACTCGCAGCGCTTGGCGCTTGGCTGGGTTGGCAAGCTTTACCAATGATCATTTTGCTTTCTTCCATCGTAGGCGTC
ATATTTGGAATAATTCAGCTACGATTGCAGAAGAAAGGGATCGAAAAGGCCTTCCCTTTCGGTCCTTACTTAGCGATTGC
CGGATGGGTAAGTTTACTCTGGGGTGATCAAATTCTAAATTGGTATTTCACATCAATTCTAGGAGCGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	87.847	99.654	0.875
pilD	Vibrio cholerae strain A1552	72.917	99.654	0.727
pilD	Acinetobacter baumannii D1279779	53.069	95.848	0.509
pilD	Acinetobacter nosocomialis M2	52.708	95.848	0.505
pilD	Neisseria gonorrhoeae MS11	46.377	95.502	0.443