Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   DBX26_RS04830 Genome accession   NZ_CP028943
Coordinates   1028279..1030537 (+) Length   752 a.a.
NCBI ID   WP_162889665.1    Uniprot ID   -
Organism   Vibrio sp. dhg     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1023279..1035537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBX26_RS04805 (DBX26_04795) - 1023632..1024201 (-) 570 WP_014231282.1 PilZ domain-containing protein -
  DBX26_RS04810 (DBX26_04800) lolC 1024453..1025661 (+) 1209 WP_065296581.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  DBX26_RS04815 (DBX26_04805) lolD 1025654..1026361 (+) 708 WP_020332845.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  DBX26_RS04820 (DBX26_04810) lolE 1026364..1027608 (+) 1245 WP_118118042.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  DBX26_RS04825 (DBX26_04815) - 1027761..1028270 (-) 510 WP_118118044.1 DUF2062 domain-containing protein -
  DBX26_RS04830 (DBX26_04820) comEC 1028279..1030537 (+) 2259 WP_162889665.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DBX26_RS04835 (DBX26_04825) msbA 1030569..1032317 (+) 1749 WP_014231288.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  DBX26_RS04840 (DBX26_04830) lpxK 1032321..1033328 (+) 1008 WP_118118048.1 tetraacyldisaccharide 4'-kinase -
  DBX26_RS04845 (DBX26_04835) - 1033309..1033488 (+) 180 WP_014231290.1 Trm112 family protein -
  DBX26_RS04850 (DBX26_04840) kdsB 1033488..1034246 (+) 759 WP_014231291.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84442.46 Da        Isoelectric Point: 8.7175

>NTDB_id=288724 DBX26_RS04830 WP_162889665.1 1028279..1030537(+) (comEC) [Vibrio sp. dhg]
MTLSEKSCTLALFVASIVSSAWWPIMPDWRWLLLGIITTGSIIKLRRGLISIGVILGLMVVIIHGNVLEYQRQALFNVGE
NSTITGKVDSSFNQISHGYEGLVTIKQVGDQSLLPFLKPKVRFITTFPIPVNSEFTTTAQVKPIIGLRNEAGFDAEKQAM
GSGILARMIVTGDAHWIIRNGRSVRQSIINLVMDDISHLDHFPLISALVFADRSWLSGDDWRGLRDSGLLHLASISGLHI
GMAFSFGFLLGVSVRSVLPRYQVVPSITGLTVALCYAWLADFSLPTTRAVSVCVIYIVLKYGLVHWSTWRVLLLAVAFQL
LIQPFASFSMSFWLSYLSVGMVLLVINFVRFNNSSWRGKLRTLFVTQLALSVFVIPISGYFFSGFSLSSIAYNLVFIPWF
GFVVVPLMFIALSTSLLLPTFSPIVWQLMDFSLWPLSESLQYAFGTWQPLSIELTWILFSLCTFLVLKRLLLWQGWLLLC
VITIIISSWNGQKSTSWRIDVLDVGHGLAVLVEKEGKALIYDTGKSWPEGSVAEQVIIPVLHRRGFREVDTLVLSHSDND
HAGGRQVIETHLKPTHKRSSQDFSGYQPCVSGDNWMWQQLDIEVLWPPQMVTRAYNPHSCVFRLRDRESDFSMLFTGDIE
SISEWILLRAPEKLSSDVMLVPHHGSKSSSNPLFIHAVSPTLAVASLAKNNQWGMPADKVVTSYLNAGALWLDTGEGGQV
TIRVTKDKWDFVTKRSDTFEPWYRQMLRKGLE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=288724 DBX26_RS04830 WP_162889665.1 1028279..1030537(+) (comEC) [Vibrio sp. dhg]
ATGACTCTCTCAGAAAAAAGTTGCACCTTGGCGTTATTTGTCGCAAGCATTGTCTCATCGGCATGGTGGCCGATAATGCC
AGATTGGCGCTGGCTGCTGCTGGGAATAATTACCACTGGTTCAATAATTAAATTACGTCGTGGCTTAATTAGCATAGGCG
TAATTTTGGGCTTAATGGTAGTCATCATCCACGGCAATGTATTGGAGTATCAGCGACAAGCCCTTTTTAATGTAGGGGAG
AATAGTACCATAACTGGCAAAGTTGACAGCTCTTTTAATCAAATAAGTCATGGATATGAAGGACTCGTGACGATAAAACA
AGTGGGTGATCAAAGTCTGTTACCTTTTCTTAAACCTAAAGTCCGTTTTATCACCACCTTTCCTATCCCTGTTAACAGTG
AATTTACGACCACGGCTCAGGTAAAGCCCATTATTGGGTTACGTAACGAAGCGGGCTTCGACGCTGAAAAGCAGGCAATG
GGAAGTGGTATTTTAGCCAGAATGATTGTGACTGGTGATGCGCACTGGATTATTCGTAACGGACGTTCTGTACGTCAGTC
GATAATCAACCTGGTAATGGATGATATCTCCCATCTAGACCACTTTCCGTTAATCAGTGCTCTGGTATTTGCTGATAGAA
GCTGGCTTTCTGGTGATGACTGGCGAGGGCTGAGAGACAGTGGATTATTGCACCTGGCCTCTATCTCCGGGCTGCACATT
GGAATGGCTTTTAGCTTTGGTTTTTTGCTCGGTGTAAGTGTTCGCTCCGTTTTACCGCGTTATCAAGTGGTGCCTTCAAT
TACGGGGTTAACCGTCGCGCTATGTTATGCCTGGCTCGCTGATTTTTCTCTGCCAACCACTCGCGCCGTATCGGTTTGTG
TCATCTACATTGTTTTAAAATACGGTTTGGTTCACTGGAGTACCTGGCGAGTGTTGCTACTGGCGGTTGCTTTTCAGCTA
CTTATTCAGCCTTTCGCATCTTTTAGTATGAGTTTCTGGTTGTCTTACCTCTCTGTAGGTATGGTGCTGTTGGTCATTAA
CTTTGTCCGGTTCAATAACAGTAGCTGGCGAGGAAAACTGCGAACCTTGTTTGTGACTCAACTTGCCTTGAGTGTATTTG
TCATACCTATCAGTGGCTATTTTTTCTCTGGTTTCAGCTTATCGTCCATCGCTTATAACCTTGTGTTTATCCCATGGTTT
GGGTTTGTCGTCGTTCCTTTAATGTTTATCGCGTTATCTACTTCTTTATTGCTACCCACATTCTCGCCAATAGTTTGGCA
ATTGATGGATTTTTCTTTATGGCCGTTAAGTGAATCTCTTCAGTATGCCTTTGGTACGTGGCAACCATTGTCGATAGAAC
TTACGTGGATACTGTTTTCTCTCTGTACTTTCTTGGTTTTGAAGCGGTTATTGCTTTGGCAGGGTTGGTTATTGCTGTGC
GTTATTACCATCATCATTTCAAGTTGGAATGGGCAAAAAAGTACCAGTTGGCGAATCGATGTTCTCGATGTCGGTCATGG
TCTTGCCGTTCTGGTAGAAAAAGAGGGTAAAGCTCTGATTTACGACACTGGAAAATCCTGGCCGGAGGGCAGTGTTGCGG
AGCAGGTGATTATACCCGTGTTACATCGCAGAGGATTTAGAGAGGTTGATACCTTGGTTCTCAGTCATTCGGATAATGAC
CACGCAGGAGGAAGGCAAGTGATTGAAACGCACCTCAAGCCGACCCATAAACGCAGCAGCCAAGATTTTAGTGGGTATCA
ACCTTGTGTGAGCGGTGATAATTGGATGTGGCAGCAACTCGATATCGAAGTGCTCTGGCCACCCCAAATGGTCACTCGAG
CCTACAACCCTCACTCGTGTGTCTTTAGACTCAGAGACCGAGAATCTGATTTTTCCATGCTGTTCACGGGTGATATTGAA
TCGATTAGCGAGTGGATACTTCTTCGTGCGCCTGAAAAATTATCTAGTGATGTGATGCTCGTTCCTCATCACGGTAGCAA
AAGTTCCTCCAACCCTCTTTTTATCCATGCAGTCTCTCCAACATTAGCGGTAGCATCACTGGCGAAAAACAATCAGTGGG
GAATGCCTGCTGACAAGGTAGTGACCTCGTATCTCAACGCAGGGGCGCTATGGCTTGATACTGGTGAGGGTGGACAAGTT
ACTATCCGAGTAACGAAAGATAAGTGGGATTTTGTAACCAAACGCAGTGATACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGGTTAGAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-681)

Competence protein (Competence)

(208-474)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

66.622

100

0.666
  comEC Vibrio campbellii strain DS40M4

63.165

100

0.632
  comEC Vibrio cholerae strain A1552

38.513

100

0.386

Multiple sequence alignment