Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   EHC68_RS14450 Genome accession   NZ_CP034305
Coordinates   2884550..2885278 (+) Length   242 a.a.
NCBI ID   WP_005460312.1    Uniprot ID   Q87S66
Organism   Vibrio parahaemolyticus strain 20151116002-3     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2879550..2890278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC68_RS14435 (EHC68_14685) clpC 2879985..2882558 (-) 2574 WP_005460310.1 ATP-dependent chaperone ClpB Regulator
  EHC68_RS14440 (EHC68_14690) pgeF 2882706..2883434 (-) 729 WP_005477884.1 peptidoglycan editing factor PgeF -
  EHC68_RS14445 (EHC68_14695) rluD 2883436..2884413 (-) 978 WP_005460300.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EHC68_RS14450 (EHC68_14700) comL 2884550..2885278 (+) 729 WP_005460312.1 outer membrane protein assembly factor BamD Machinery gene
  EHC68_RS14455 (EHC68_14705) - 2885413..2886894 (+) 1482 WP_025507089.1 lytic transglycosylase F -
  EHC68_RS14460 (EHC68_14710) hpf 2887225..2887551 (+) 327 WP_005468590.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  EHC68_RS14465 (EHC68_14715) pheA 2887795..2888973 (+) 1179 WP_005468591.1 prephenate dehydratase -
  EHC68_RS14470 (EHC68_14720) yjjX 2888998..2889531 (+) 534 WP_023585665.1 inosine/xanthosine triphosphatase -
  EHC68_RS14475 (EHC68_14725) trpR 2889580..2889891 (-) 312 WP_005497218.1 trp operon repressor -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27848.79 Da        Isoelectric Point: 5.8151

>NTDB_id=288717 EHC68_RS14450 WP_005460312.1 2884550..2885278(+) (comL) [Vibrio parahaemolyticus strain 20151116002-3]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=288717 EHC68_RS14450 WP_005460312.1 2884550..2885278(+) (comL) [Vibrio parahaemolyticus strain 20151116002-3]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCGACCCATGAAAAAATGGACTGGGTGCT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGCAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAACTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTAGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCGTGGATTGCTGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCAGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87S66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405