Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   DBX26_RS00485 Genome accession   NZ_CP028943
Coordinates   102886..103608 (-) Length   240 a.a.
NCBI ID   WP_118117420.1    Uniprot ID   -
Organism   Vibrio sp. dhg     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 97886..108608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBX26_RS00460 (DBX26_00460) - 99065..99556 (+) 492 WP_041170184.1 type II secretion system protein M -
  DBX26_RS00465 (DBX26_00465) - 99558..100319 (+) 762 WP_118117418.1 type II secretion system protein N -
  DBX26_RS00470 (DBX26_00470) cysQ 100603..101430 (-) 828 WP_020335696.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  DBX26_RS00475 (DBX26_00475) nudE 101475..102044 (-) 570 WP_020335697.1 ADP compounds hydrolase NudE -
  DBX26_RS00480 (DBX26_00480) nfuA 102205..102789 (-) 585 WP_014230546.1 Fe-S biogenesis protein NfuA -
  DBX26_RS00485 (DBX26_00485) comF 102886..103608 (-) 723 WP_118117420.1 ComF family protein Machinery gene
  DBX26_RS00490 (DBX26_00490) bioH 103693..104460 (+) 768 WP_162889647.1 pimeloyl-ACP methyl ester esterase BioH -
  DBX26_RS00495 (DBX26_00495) - 104572..105036 (+) 465 WP_118117424.1 ATP-dependent Lon protease -
  DBX26_RS00500 (DBX26_00500) - 105113..107443 (-) 2331 WP_118117426.1 Tex family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27578.89 Da        Isoelectric Point: 9.3814

>NTDB_id=288716 DBX26_RS00485 WP_118117420.1 102886..103608(-) (comF) [Vibrio sp. dhg]
MLSHHWQNIMHRVLGSQCGLCKLPLKTTQPPNALRWCSHCFQYLNPIRRCQHCGLAMQKTERSDTVCGECLAEPPPWQRL
ITLGDYAFPLSREVQRFKDHGENWHVEALTQLLAARISSPATLITSVPLHWRRYLSRGFNQSDVLARHLAAHLHRHFDPK
VFRRIQYANSQRGHTKTQREQNLQGAFILNKKPMYKHVAIVDDVVTTGSTVRQLCQLLLEVGVESIDIYCICRTPAPTSL

Nucleotide


Download         Length: 723 bp        

>NTDB_id=288716 DBX26_RS00485 WP_118117420.1 102886..103608(-) (comF) [Vibrio sp. dhg]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTGCTCGGTAGTCAATGTGGTTTGTGCAAGCTGCCACTGAAAAC
AACACAACCGCCTAACGCTCTTCGTTGGTGTAGCCATTGTTTTCAGTATCTTAATCCGATTAGAAGGTGCCAACATTGCG
GTTTGGCTATGCAGAAAACAGAAAGGAGCGACACGGTGTGTGGCGAGTGCTTGGCCGAACCACCGCCCTGGCAGCGACTC
ATTACTCTCGGTGACTATGCGTTTCCTCTGTCACGCGAGGTTCAGCGCTTTAAGGATCATGGCGAGAATTGGCACGTAGA
AGCATTAACGCAATTGCTCGCGGCGCGTATTTCTTCTCCAGCGACACTGATTACCAGCGTTCCACTGCACTGGCGACGCT
ATTTATCGCGTGGATTCAATCAAAGTGATGTACTTGCCAGACACTTGGCAGCCCATCTGCATCGCCATTTTGACCCTAAA
GTATTTCGTCGTATCCAATACGCAAACTCTCAGAGAGGCCATACTAAAACCCAACGAGAGCAAAACTTGCAAGGTGCGTT
TATCCTCAATAAAAAGCCGATGTATAAACACGTGGCGATTGTCGATGATGTCGTCACAACGGGCAGTACGGTACGACAAT
TATGCCAATTACTACTTGAAGTTGGTGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTACTTCGCTC
TAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

68.465

100

0.688
  comF Vibrio cholerae strain A1552

50.211

98.75

0.496

Multiple sequence alignment