Detailed information NTG0288568

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: EHC69_RS01370
• Genome accession: NZ_CP034298
• Coordinates: 272621..273628 (-)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 20160303005-1
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 267621..278628

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EHC69_RS01335 (EHC69_01350)	-	267798..268229 (-)	432	WP_005489473.1	DUF2787 family protein	-
EHC69_RS01340 (EHC69_01355)	radC	268226..268699 (-)	474	WP_005489555.1	RadC family protein	Machinery gene
EHC69_RS01345 (EHC69_01360)	-	268870..269019 (+)	150	WP_005489496.1	AlpA family phage regulatory protein	-
EHC69_RS01350 (EHC69_01365)	-	269179..269403 (+)	225	WP_005489715.1	hypothetical protein	-
EHC69_RS01355 (EHC69_01370)	hslU	269828..271159 (-)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
EHC69_RS01360 (EHC69_01375)	hslV	271183..271734 (-)	552	WP_025789387.1	ATP-dependent protease subunit HslV	-
EHC69_RS01365 (EHC69_01380)	ftsN	271899..272444 (-)	546	WP_005481405.1	cell division protein FtsN	-
EHC69_RS01370 (EHC69_01385)	cytR	272621..273628 (-)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
EHC69_RS01375 (EHC69_01390)	priA	273961..276165 (-)	2205	WP_025789388.1	primosomal protein N'	Machinery gene
EHC69_RS01385 (EHC69_01400)	rpmE	276460..276681 (+)	222	WP_005457203.1	50S ribosomal protein L31	-
EHC69_RS01390 (EHC69_01405)	rpsJ	277139..277450 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
EHC69_RS01395 (EHC69_01410)	rplC	277465..278094 (+)	630	WP_005456132.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=288568 EHC69_RS01370 WP_005481416.1 272621..273628(-) (cytR) [Vibrio parahaemolyticus strain 20160303005-1]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=288568 EHC69_RS01370 WP_005481416.1 272621..273628(-) (cytR) [Vibrio parahaemolyticus strain 20160303005-1]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGTACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GTGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGTGTTCCACAAGATCT
GTCGGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTCGAACTCCTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904