Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   DCC85_RS20880 Genome accession   NZ_CP028922
Coordinates   4463873..4464826 (-) Length   317 a.a.
NCBI ID   WP_108467290.1    Uniprot ID   A0A2S0UEY9
Organism   Paenibacillus sp. CAA11     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4458873..4469826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCC85_RS20855 (DCC85_20855) - 4458972..4459841 (-) 870 WP_108467286.1 LysR family transcriptional regulator -
  DCC85_RS20860 (DCC85_20860) - 4459984..4461069 (+) 1086 WP_108467287.1 YeiH family protein -
  DCC85_RS20865 (DCC85_20865) - 4461136..4462104 (-) 969 WP_199910034.1 siderophore ABC transporter substrate-binding protein -
  DCC85_RS20870 (DCC85_20870) - 4462165..4462923 (-) 759 WP_108467288.1 ABC transporter ATP-binding protein -
  DCC85_RS20875 (DCC85_20875) - 4462917..4463876 (-) 960 WP_108467289.1 iron chelate uptake ABC transporter family permease subunit -
  DCC85_RS20880 (DCC85_20880) ceuB 4463873..4464826 (-) 954 WP_108467290.1 ABC transporter permease Machinery gene
  DCC85_RS20885 (DCC85_20885) - 4465039..4465170 (+) 132 WP_108467291.1 DUF4023 domain-containing protein -
  DCC85_RS20890 (DCC85_20890) - 4465227..4465409 (-) 183 WP_108467292.1 hypothetical protein -
  DCC85_RS20895 (DCC85_20895) - 4465497..4467059 (-) 1563 WP_108467293.1 diguanylate cyclase -
  DCC85_RS20900 (DCC85_20900) - 4467308..4468267 (-) 960 WP_108467294.1 acetylxylan esterase -
  DCC85_RS20905 (DCC85_20905) - 4468378..4469400 (-) 1023 WP_108467295.1 glycoside hydrolase family 130 protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34708.94 Da        Isoelectric Point: 10.1655

>NTDB_id=288569 DCC85_RS20880 WP_108467290.1 4463873..4464826(-) (ceuB) [Paenibacillus sp. CAA11]
MKIGYMLVALIVLSITSLFIGNSEISPMDIFHLTPVQLQVLQVSRIPRLISIVVAGVSMSVIGLIMQQLTRNRFVSPTTA
GTIDSARLGILVALMLFPGAAPLQKMLIAFAFALAGTLIFMRILEKVKFKDTIYIALLGLMFGNIISSITTFFAYKNDLI
QNMSSWLQGDFSTILKGRYELIYISIPLVIIAYLFAGRFTLAGMGEEFATNLGLSYRRVVNIGLILVAMISSVVIITVGT
IPFLGLVVPNIVTMYRGDNLRITLPHTALLGAIFVLVCDILGQLIIYPYQVSISLTVGVVGSALFLYLLLRRKAYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=288569 DCC85_RS20880 WP_108467290.1 4463873..4464826(-) (ceuB) [Paenibacillus sp. CAA11]
ATGAAAATCGGCTATATGCTTGTTGCCCTTATTGTCTTATCTATTACATCTTTGTTCATAGGCAATTCGGAAATATCCCC
AATGGATATTTTCCATCTGACGCCGGTACAACTCCAGGTGCTTCAGGTCAGCCGGATTCCACGCCTTATCAGCATAGTTG
TTGCAGGAGTCAGCATGAGTGTAATTGGTCTGATTATGCAGCAGCTCACCCGCAATCGCTTCGTGTCACCTACGACGGCA
GGCACCATTGATTCGGCCAGATTGGGAATTCTGGTAGCTCTTATGCTGTTCCCGGGGGCAGCGCCGCTGCAGAAGATGCT
GATTGCCTTCGCTTTTGCCTTGGCGGGTACCCTGATCTTTATGAGGATTCTGGAGAAGGTCAAATTCAAGGACACGATCT
ATATTGCCCTGCTGGGCTTGATGTTCGGGAACATTATCAGCTCGATCACTACTTTTTTTGCCTATAAAAATGACCTGATT
CAGAATATGTCCTCCTGGCTTCAAGGCGATTTCTCCACCATTCTCAAAGGGCGGTATGAGCTGATCTATATCAGCATCCC
GCTGGTCATTATTGCTTACCTCTTCGCAGGCCGCTTTACCCTCGCAGGGATGGGAGAGGAGTTCGCAACGAACCTGGGGC
TGTCCTATCGGCGAGTGGTGAATATCGGCCTCATTCTGGTCGCTATGATCTCATCTGTTGTCATCATTACGGTCGGGACA
ATTCCGTTTCTCGGGCTGGTTGTGCCTAATATTGTTACGATGTACCGGGGGGATAATCTGCGGATCACCCTGCCGCATAC
GGCACTGCTCGGAGCCATCTTCGTGCTTGTCTGCGACATTCTAGGACAGCTGATTATCTATCCCTACCAGGTGTCGATCA
GTCTGACTGTCGGCGTGGTGGGCAGCGCCTTGTTCCTGTACCTATTGCTTAGAAGAAAGGCGTATGCGTCATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S0UEY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.42

96.845

0.517

Multiple sequence alignment