Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EHC69_RS01340 Genome accession   NZ_CP034298
Coordinates   268226..268699 (-) Length   157 a.a.
NCBI ID   WP_005489555.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20160303005-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 263226..273699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC69_RS01315 (EHC69_01330) - 263493..264299 (-) 807 WP_159408337.1 hypothetical protein -
  EHC69_RS01320 (EHC69_01335) - 264677..265333 (+) 657 WP_005489591.1 inovirus Gp2 family protein -
  EHC69_RS01325 (EHC69_01340) - 265700..266863 (-) 1164 WP_005489657.1 hypothetical protein -
  EHC69_RS01330 (EHC69_01345) - 266860..267684 (-) 825 WP_021450991.1 YafY family protein -
  EHC69_RS01335 (EHC69_01350) - 267798..268229 (-) 432 WP_005489473.1 DUF2787 family protein -
  EHC69_RS01340 (EHC69_01355) radC 268226..268699 (-) 474 WP_005489555.1 RadC family protein Machinery gene
  EHC69_RS01345 (EHC69_01360) - 268870..269019 (+) 150 WP_005489496.1 AlpA family phage regulatory protein -
  EHC69_RS01350 (EHC69_01365) - 269179..269403 (+) 225 WP_005489715.1 hypothetical protein -
  EHC69_RS01355 (EHC69_01370) hslU 269828..271159 (-) 1332 WP_005489452.1 HslU--HslV peptidase ATPase subunit -
  EHC69_RS01360 (EHC69_01375) hslV 271183..271734 (-) 552 WP_025789387.1 ATP-dependent protease subunit HslV -
  EHC69_RS01365 (EHC69_01380) ftsN 271899..272444 (-) 546 WP_005481405.1 cell division protein FtsN -
  EHC69_RS01370 (EHC69_01385) cytR 272621..273628 (-) 1008 WP_005481416.1 DNA-binding transcriptional regulator CytR Regulator

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17632.07 Da        Isoelectric Point: 7.2351

>NTDB_id=288567 EHC69_RS01340 WP_005489555.1 268226..268699(-) (radC) [Vibrio parahaemolyticus strain 20160303005-1]
MSSNHLHYQKQKKHQENEILEHAAEILANRYVRGNALCNPEATKEYVRFKLASSEHEVFALLLLDNQHRVIEFKSLFKGT
IDSASVYPREVVKSVLEVNAAAVILAHNHPSGDPSPSQADRRITRKLIDALALVDVRVLDHIVVGESSVSFAEKGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=288567 EHC69_RS01340 WP_005489555.1 268226..268699(-) (radC) [Vibrio parahaemolyticus strain 20160303005-1]
ATGTCGAGCAATCACCTTCACTACCAAAAACAAAAGAAACATCAAGAAAATGAAATCCTAGAGCATGCTGCTGAAATCCT
AGCTAACCGCTACGTTCGAGGTAATGCCCTTTGTAACCCTGAAGCAACCAAAGAGTATGTTCGATTCAAACTAGCCAGCT
CGGAGCACGAGGTTTTCGCTCTGCTATTACTTGATAACCAACACCGTGTCATCGAGTTTAAATCACTCTTTAAAGGCACC
ATTGACTCCGCCAGCGTCTATCCGCGCGAGGTCGTCAAAAGCGTTTTGGAAGTAAATGCTGCGGCGGTCATTCTGGCGCA
TAACCACCCTTCTGGTGACCCTTCCCCATCTCAAGCGGATAGGCGTATCACACGCAAGCTTATCGACGCTTTAGCGTTAG
TGGATGTCAGGGTGCTTGACCATATCGTTGTAGGAGAAAGTAGTGTCTCGTTTGCAGAAAAGGGGTGGCTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(39-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

48.175

87.261

0.42