Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   EHC66_RS13420 Genome accession   NZ_CP034294
Coordinates   2728321..2729049 (+) Length   242 a.a.
NCBI ID   WP_020904194.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20140829008-1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2723321..2734049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC66_RS13405 (EHC66_13610) clpC 2723756..2726329 (-) 2574 WP_005460310.1 ATP-dependent chaperone ClpB Regulator
  EHC66_RS13410 (EHC66_13615) pgeF 2726477..2727205 (-) 729 WP_005460314.1 peptidoglycan editing factor PgeF -
  EHC66_RS13415 (EHC66_13620) rluD 2727207..2728184 (-) 978 WP_005460300.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EHC66_RS13420 (EHC66_13625) comL 2728321..2729049 (+) 729 WP_020904194.1 outer membrane protein assembly factor BamD Machinery gene
  EHC66_RS13425 (EHC66_13630) - 2729184..2730665 (+) 1482 WP_322107826.1 lytic transglycosylase F -
  EHC66_RS13430 (EHC66_13635) hpf 2730996..2731322 (+) 327 WP_005468590.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  EHC66_RS13435 (EHC66_13640) pheA 2731566..2732744 (+) 1179 WP_005468591.1 prephenate dehydratase -
  EHC66_RS13440 (EHC66_13645) yjjX 2732769..2733302 (+) 534 WP_005497220.1 inosine/xanthosine triphosphatase -
  EHC66_RS13445 (EHC66_13650) trpR 2733351..2733662 (-) 312 WP_005497218.1 trp operon repressor -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27875.81 Da        Isoelectric Point: 5.8151

>NTDB_id=288542 EHC66_RS13420 WP_020904194.1 2728321..2729049(+) (comL) [Vibrio parahaemolyticus strain 20140829008-1]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFNIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=288542 EHC66_RS13420 WP_020904194.1 2728321..2729049(+) (comL) [Vibrio parahaemolyticus strain 20140829008-1]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCGACTCATGAAAAAATGGACTGGGTACT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAACATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTAAAAAACCGCTTGGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCATGGATTGCTGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCAGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

40.833

99.174

0.405
  comL Neisseria gonorrhoeae MS11

40.417

99.174

0.401