Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   EHC70_RS05280 Genome accession   NZ_CP034285
Coordinates   1056701..1058731 (+) Length   676 a.a.
NCBI ID   WP_005494496.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20140624012-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1051701..1063731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC70_RS05255 (EHC70_05355) rsxC 1051914..1054523 (-) 2610 WP_159404047.1 electron transport complex subunit RsxC -
  EHC70_RS05260 (EHC70_05360) rsxB 1054532..1055128 (-) 597 WP_159404048.1 electron transport complex subunit RsxB -
  EHC70_RS05265 (EHC70_05365) rsxA 1055132..1055710 (-) 579 WP_005380762.1 electron transport complex subunit RsxA -
  EHC70_RS05280 (EHC70_05380) uvrB 1056701..1058731 (+) 2031 WP_005494496.1 excinuclease ABC subunit UvrB Machinery gene
  EHC70_RS05285 (EHC70_05385) luxO 1059021..1060424 (+) 1404 WP_005461534.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  EHC70_RS05290 (EHC70_05390) luxU 1060427..1060765 (+) 339 WP_025500803.1 quorum-sensing phosphorelay protein LuxU -
  EHC70_RS05295 (EHC70_05395) - 1060842..1061735 (-) 894 WP_005494500.1 YvcK family protein -
  EHC70_RS05300 (EHC70_05400) moaA 1062031..1063020 (+) 990 WP_005461510.1 GTP 3',8-cyclase MoaA -
  EHC70_RS05305 (EHC70_05405) moaB 1063122..1063634 (+) 513 WP_005461494.1 molybdenum cofactor biosynthesis protein B -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 77042.72 Da        Isoelectric Point: 4.8615

>NTDB_id=288328 EHC70_RS05280 WP_005494496.1 1056701..1058731(+) (uvrB) [Vibrio parahaemolyticus strain 20140624012-1]
MSKVYELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLAPNKTLAAQLYGEMKSF
FPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAIIVASVSAIYGLGDPESYLQMMLH
LRRGDVIDQRDMLRRLAELQYSRNDVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLP
RYTIYPKTHYVTPRDRILEAIESIKVELEVRKKQLLENNKLIEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRSEG
EPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVEFGFRLPSALDNRPLKFEEFESLAPQTIFVSATPGNY
ELEKSAGEIADQVVRPTGLLDPILEVRPVATQVDDLLSEIRIRAAKEERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSD
IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNIEGKAILYADSITK
SMKKAMDETNRRREKQQAYNEKMGITPQALKRNIKDIMELGDITKSKRQRNTKQVPLSKVAEPSQTYEVMSPQQLEKEIS
RLEAAMYQHAQDLEFELAAEKRDEIEKLRAQFIANS

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=288328 EHC70_RS05280 WP_005494496.1 1056701..1058731(+) (uvrB) [Vibrio parahaemolyticus strain 20140624012-1]
ATGAGTAAAGTTTATGAACTGGTCTCTGAGTATCAACCGTCAGGTGACCAGCCAACCGCGATTAAGCAATTATTAGAAGG
CTTAGATGCGGGGTTGGCGCATCAGACGCTTTTAGGTGTAACGGGTTCTGGTAAAACGTTCACGCTAGCGAATGTGATTG
CTCAAGCACAGCGCCCTGCAATTTTACTGGCGCCAAATAAAACCCTCGCGGCTCAGTTGTATGGGGAAATGAAATCGTTC
TTTCCTAACAATGCGGTCGAGTATTTTGTGTCTTACTACGACTACTATCAACCAGAAGCGTACGTGCCTACAACTGACAC
CTTTATTGAAAAAGATGCGTCAGTGAACGCTCACATTGAGCAAATGCGTTTGTCTGCCACCAAAGCTTTACTCGAACGAA
AAGACGCCATCATCGTCGCTTCTGTCTCTGCCATCTATGGTTTGGGTGATCCCGAGTCGTATTTACAGATGATGCTGCAC
TTACGCCGTGGTGACGTGATCGATCAGCGTGACATGCTTCGTCGCCTAGCGGAACTCCAATACTCGCGTAATGATGTCGC
TTTTGAACGCGGTCAGTTCCGTGTTCGCGGCGAAGTGATTGACATATTCCCAGCCGAGTCTGACCAAGATGCTGTGCGCG
TTGAAATGTTTGATGATGAAGTGGATTGCATCAGTGTGTTCGACCCATTGACGGGTGTCGTGAAACAAAGAGATTTGCCG
CGTTACACGATTTACCCGAAAACGCACTACGTGACGCCCCGCGACCGCATTCTCGAAGCGATAGAAAGCATCAAAGTTGA
GCTCGAAGTACGCAAGAAACAATTACTAGAGAATAACAAGCTAATAGAAGAGCAGCGCATTAGCCAGCGTACACAGTTTG
ATATCGAGATGATGAATGAGCTCGGTTTTTGCTCTGGTATCGAAAACTACTCACGTTATCTCAGTGGTCGTTCTGAGGGT
GAGCCGCCTCCAACCTTGTTCGATTACTTGCCTCATGATGGTTTGCTTATCATCGATGAGTCCCACGTGACTGTACCGCA
GATTGGTGCGATGTATAAAGGTGACCGTTCACGTAAAGAAACTCTGGTTGAGTTTGGTTTCCGCTTACCATCGGCGTTGG
ACAACCGTCCTCTAAAATTTGAAGAATTTGAATCTCTTGCTCCGCAAACTATTTTCGTCTCGGCGACGCCGGGCAATTAT
GAGCTAGAGAAATCGGCAGGTGAAATTGCGGATCAAGTCGTGCGTCCTACTGGCTTGCTGGACCCAATACTCGAAGTTCG
ACCAGTCGCGACGCAGGTCGATGATTTGTTGTCTGAAATTCGTATTCGTGCCGCCAAAGAGGAGCGTGTTCTTGTTACGA
CTCTGACCAAACGAATGGCGGAAGATTTAACGGAATATCTGCATGAGCATGATGTTCGTGTTCGTTATCTTCACTCCGAC
ATCGACACGGTAGAGCGCGTCGAGATCATTCGAGATTTGCGCTTAGGTGAGTTTGATGTCTTAGTGGGTATCAACTTGCT
TCGAGAAGGTTTGGATATGCCGGAAGTCTCGTTGGTGGCAATTTTGGATGCCGACAAAGAAGGTTTCTTGCGTTCAGAAC
GTTCACTCATTCAGACGATAGGTCGTGCTGCACGAAACATTGAGGGTAAAGCGATTCTCTATGCGGATAGCATTACAAAA
TCGATGAAAAAAGCGATGGATGAAACCAATCGTCGTCGTGAGAAGCAGCAAGCGTACAACGAGAAAATGGGCATTACGCC
GCAAGCGTTAAAACGTAATATCAAGGATATTATGGAATTGGGCGACATTACTAAGTCCAAACGTCAACGCAATACTAAGC
AAGTGCCACTGTCTAAAGTGGCTGAACCATCTCAAACTTACGAAGTGATGTCTCCACAACAATTGGAGAAGGAAATCAGT
CGACTAGAAGCAGCGATGTACCAACATGCTCAGGATCTGGAATTCGAGCTTGCGGCTGAGAAGCGTGATGAAATAGAAAA
ACTGCGTGCGCAATTCATCGCGAATAGCTAG

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(553-594)

UvrB interaction domain (UvrB_inter)

(159-250)

Helicase conserved C-terminal domain (Helicase_C)

(440-545)

Type III restriction enzyme, res subunit (ResIII)

(13-129)

UvrB/uvrC motif (UVR)

(636-671)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.856

98.521

0.55
  uvrB Streptococcus pneumoniae R6

55.856

98.521

0.55
  uvrB Streptococcus pneumoniae D39

55.856

98.521

0.55