Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PLAV_RS15495 Genome accession   NC_009719
Coordinates   3251480..3251959 (+) Length   159 a.a.
NCBI ID   WP_012111975.1    Uniprot ID   A7HXM1
Organism   Parvibaculum lavamentivorans DS-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3246480..3256959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PLAV_RS15485 (Plav_3045) uvrA 3247857..3250886 (-) 3030 WP_049767888.1 excinuclease ABC subunit UvrA -
  PLAV_RS15490 (Plav_3046) - 3251117..3251389 (+) 273 WP_012111974.1 hypothetical protein -
  PLAV_RS15495 (Plav_3047) ssb 3251480..3251959 (+) 480 WP_012111975.1 single-stranded DNA-binding protein Machinery gene
  PLAV_RS15500 (Plav_3048) - 3251983..3252840 (+) 858 WP_012111976.1 protein phosphatase 2C domain-containing protein -
  PLAV_RS15505 (Plav_3049) gyrA 3253138..3255915 (+) 2778 WP_049767889.1 DNA gyrase subunit A -
  PLAV_RS15510 (Plav_3050) coaD 3255927..3256439 (+) 513 WP_012111978.1 pantetheine-phosphate adenylyltransferase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17010.77 Da        Isoelectric Point: 5.3108

>NTDB_id=28828 PLAV_RS15495 WP_012111975.1 3251480..3251959(+) (ssb) [Parvibaculum lavamentivorans DS-1]
MAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSESWRDKNTGERREKTEWHRVVVFNEGLCKVIEQYVKKGAKLYI
EGALQTRKWTDQSGVEKYSTEIVLQGFNSTLTMLDGKGGGGSSGGGGDYGSGSDDFGGGSGGGSSRGSFSQDLDDEIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=28828 PLAV_RS15495 WP_012111975.1 3251480..3251959(+) (ssb) [Parvibaculum lavamentivorans DS-1]
ATGGCAGGCAGCGTCAACAAGGTCATCCTGATCGGCAATGTAGGCGCCGACCCCGAAATCCGCCGCACGCAGGACGGCAG
GCCGATCGCCAACCTCCGCATCGCGACGTCGGAAAGCTGGCGCGACAAGAACACGGGCGAGCGCCGCGAGAAGACCGAGT
GGCACCGCGTCGTCGTCTTCAACGAAGGCCTCTGCAAGGTCATCGAGCAATATGTGAAGAAGGGCGCCAAGCTTTACATC
GAAGGCGCGCTCCAGACCCGTAAGTGGACCGACCAGTCCGGCGTCGAGAAATACTCCACCGAAATCGTGCTGCAGGGCTT
CAACTCGACGCTGACCATGCTGGACGGCAAGGGTGGCGGCGGCTCTTCGGGCGGTGGCGGCGATTACGGCAGCGGCTCCG
ACGATTTCGGCGGCGGCAGCGGTGGCGGTTCCTCGCGCGGCAGCTTCAGCCAGGACCTCGACGACGAAATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7HXM1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

44.086

100

0.516
  ssb Vibrio cholerae strain A1552

45.665

100

0.497
  ssb Neisseria meningitidis MC58

34.615

100

0.396

Multiple sequence alignment