Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   Sa5Y_RS09425 Genome accession   NZ_CP028892
Coordinates   2008231..2009598 (-) Length   455 a.a.
NCBI ID   WP_108243939.1    Uniprot ID   -
Organism   Vibrio cholerae strain Sa5Y     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2003231..2014598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Sa5Y_RS09390 (Sa5Y_VC01837) moaE 2003944..2004405 (-) 462 WP_000350082.1 molybdopterin synthase catalytic subunit MoaE -
  Sa5Y_RS09395 (Sa5Y_VC01838) moaD 2004407..2004652 (-) 246 WP_000598589.1 molybdopterin synthase sulfur carrier subunit -
  Sa5Y_RS09400 (Sa5Y_VC01839) moaC 2004649..2005128 (-) 480 WP_000080912.1 cyclic pyranopterin monophosphate synthase MoaC -
  Sa5Y_RS09405 (Sa5Y_VC01840) moaB 2005139..2005651 (-) 513 WP_000509705.1 molybdenum cofactor biosynthesis protein B -
  Sa5Y_RS09410 (Sa5Y_VC01841) moaA 2005711..2006700 (-) 990 WP_032480300.1 GTP 3',8-cyclase MoaA -
  Sa5Y_RS09415 (Sa5Y_VC01843) - 2007007..2007897 (+) 891 WP_000061070.1 YvcK family protein -
  Sa5Y_RS09420 (Sa5Y_VC01844) luxU 2007886..2008227 (-) 342 WP_001209531.1 quorum-sensing phosphorelay protein LuxU -
  Sa5Y_RS09425 (Sa5Y_VC01845) luxO 2008231..2009598 (-) 1368 WP_108243939.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  Sa5Y_RS09435 (Sa5Y_VC01847) uvrB 2010029..2012059 (-) 2031 WP_000029983.1 excinuclease ABC subunit UvrB -
  Sa5Y_RS09445 (Sa5Y_VC01849) rsxA 2012941..2013522 (+) 582 WP_000141550.1 electron transport complex subunit RsxA -
  Sa5Y_RS09450 (Sa5Y_VC01850) rsxB 2013522..2014109 (+) 588 WP_000104488.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50894.20 Da        Isoelectric Point: 5.7719

>NTDB_id=288221 Sa5Y_RS09425 WP_108243939.1 2008231..2009598(-) (luxO) [Vibrio cholerae strain Sa5Y]
MVEDTASVAALYRSYLRPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGF
MSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKVKEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=288221 Sa5Y_RS09425 WP_108243939.1 2008231..2009598(-) (luxO) [Vibrio cholerae strain Sa5Y]
ATGGTAGAAGACACGGCATCGGTGGCGGCGCTGTATCGTTCTTACCTCAGACCGCTGGATATTGATATCAATATCGTGGG
TACCGGACGCGATGCCATCGAGAGTATTGGCCGTCGCGAGCCGGACTTAATCCTGCTGGATTTACGTTTGCCAGATATGA
CGGGGATGGACGTACTCTATGCAGTGAAAGAGAAATCACCGGATGTGCCTATCGTGTTTATGACCGCGCATGGTTCGATT
GATACGGCGGTTGAAGCCATGCGTCATGGTGCGCAAGACTTTTTGATCAAGCCGTGTGAAGCGGACCGACTGCGGGTCAC
AGTGAATAATGCGATTCGCAAAGCCTCGAAACTCAAAAACGATGTTGATAATAAAAATCAAAACTATCAAGGCTTTATTG
GTAGCAGTCAAACCATGCAGGCGGTGTACCGCACCATTGACTCTGCGGCGAGCAGCAAAGCCAGTATTTTTATTACCGGC
GAAAGTGGTACCGGTAAAGAAGTGTGCGCGGAAGCGATTCATGCCGCGAGCAAGCGTGGAGATAAGCCATTTATCGCCAT
CAACTGTGCGGCCATTCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTCAAAGGGGCTTTTACTGGGGCGGCGA
CTGAGCGTCAAGGCGCGGCAGAAGCGGCTGATGGGGGAACCCTCTTTTTGGATGAATTGTGCGAAATGGATCTGGATCTG
CAGACCAAACTTCTGCGCTTTATTCAGACAGGGACATTCCAAAAAGTTGGATCTTCCAAAATGAAAAGCGTGGATGTGCG
TTTTGTGTGTGCAACGAACCGCGATCCGTGGAAGGAAGTGCAAGAAGGGCGTTTTCGTGAAGACCTGTACTACCGCTTGT
ATGTGATCCCGCTGCATTTACCGCCATTGCGTGCGCGCGGTGATGATGTGATCGAGATTGCTTATTCACTGCTTGGCTTT
ATGTCCAAGGAAGAGGGCAAAGATTTTGTCCGTTTGTCGGCTGAAGTGGTGGAGCGTTTTCGTCAATACGAGTGGCCGGG
TAATGTGCGTCAATTGCAAAACGTTCTGCGCAACGTGGTCGTGCTCAATGAAGGTCGTGAAATCACCCTAGATATGCTGC
CTCCTCCTCTTAATCAAATGTCCGCGCCGATCAATCGGGCATTACCGCTTGCGCATGAGAATAAAGTATCCGTGCATGAG
ATTTTTCCGCTGTGGATGACCGAAAAACAAGCCATTGAACAAGCCATCGAAGCGTGTGATGGTAACATTCCCCGTGCCGC
AACCTATCTGGATGTCAGCCCGTCAACCATCTATCGCAAGCTGCAAACTTGGAATGAAAAAGTGAAAGAAAAAGAGAAGG
AACGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Response regulator receiver domain (Response_reg)

(2-108)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

99.78

100

0.998
  pilR Pseudomonas aeruginosa PAK

38.274

99.341

0.38

Multiple sequence alignment