Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   Sa5Y_RS01480 Genome accession   NZ_CP028892
Coordinates   303180..303812 (-) Length   210 a.a.
NCBI ID   WP_000242749.1    Uniprot ID   A0A6G8D3R0
Organism   Vibrio cholerae strain Sa5Y     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 298180..308812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Sa5Y_RS01460 (Sa5Y_VC00288) - 298330..299541 (+) 1212 WP_094392920.1 aspartate aminotransferase family protein -
  Sa5Y_RS01465 (Sa5Y_VC00289) astA 299681..300700 (+) 1020 WP_094392919.1 arginine N-succinyltransferase -
  Sa5Y_RS01470 (Sa5Y_VC00290) astD 300710..302167 (+) 1458 WP_094392922.1 succinylglutamate-semialdehyde dehydrogenase -
  Sa5Y_RS01475 (Sa5Y_VC00291) - 302310..303101 (+) 792 WP_094392918.1 DUF1338 domain-containing protein -
  Sa5Y_RS01480 (Sa5Y_VC00292) crp 303180..303812 (-) 633 WP_000242749.1 cAMP-activated global transcriptional regulator CRP Regulator
  Sa5Y_RS01485 (Sa5Y_VC00293) - 304055..304924 (-) 870 WP_001274667.1 phosphoribulokinase -
  Sa5Y_RS01490 (Sa5Y_VC00294) - 305021..305230 (-) 210 WP_000586561.1 YheU family protein -
  Sa5Y_RS01495 (Sa5Y_VC00295) - 305359..306348 (-) 990 WP_000206394.1 hydrolase -
  Sa5Y_RS01500 (Sa5Y_VC00296) - 306345..306830 (-) 486 WP_001278736.1 TIGR02444 family protein -
  Sa5Y_RS01505 (Sa5Y_VC00297) - 306831..308747 (-) 1917 WP_000627672.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23635.45 Da        Isoelectric Point: 8.2784

>NTDB_id=288206 Sa5Y_RS01480 WP_000242749.1 303180..303812(-) (crp) [Vibrio cholerae strain Sa5Y]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLARQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=288206 Sa5Y_RS01480 WP_000242749.1 303180..303812(-) (crp) [Vibrio cholerae strain Sa5Y]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCATCAAA
AAGCACGCTGATCCACGCGGGTGAGAAGGCGGAAACGCTGTACTACATCGTAAAAGGTTCAGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAAGAGATGATTCTCTCTTACCTGAACCAAGGTGATTTCATCGGTGAACTCGGCCTGTTTGAAGAAGGT
CAAGAGCGTACCGCTTGGGTTCGTGCCAAAACACCGTGTGAAGTGGCTGAAATCTCATTTAAGAAATTCCGTCAGTTAAT
CCAAGTTAACCCAGACATTTTGATGCGCCTTTCAGGTCAAATGGCTCGTCGTCTGCAAGTGACCAGCCAGAAAGTTGGCG
ACCTTGCGTTCCTAGACGTAACTGGCCGTATCGCACAGACTCTGCTGAACCTTGCACGTCAGCCAGATGCGATGACTCAC
CCTGATGGTATGCAAATCAAGATCACTCGCCAAGAGATCGGTCAAATTGTTGGCTGTTCTCGCGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATCTCTGCCCACGGTAAAACCATCGTGGTTTACGGCACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8D3R0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

100

100

1
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment