Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   EAL91_RS04150 Genome accession   NZ_CP034147
Coordinates   825882..827858 (+) Length   658 a.a.
NCBI ID   WP_121054266.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP14039     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 820882..832858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAL91_RS04130 - 821040..821810 (+) 771 WP_121054719.1 HP1117 family Sel1-like repeat protein -
  EAL91_RS04135 - 822048..822248 (-) 201 WP_129484905.1 hypothetical protein -
  EAL91_RS04140 - 822526..824960 (+) 2435 Protein_786 DUF3519 domain-containing protein -
  EAL91_RS04145 - 824964..825842 (+) 879 WP_121054208.1 hypothetical protein -
  EAL91_RS04150 uvrB 825882..827858 (+) 1977 WP_121054266.1 excinuclease ABC subunit UvrB Machinery gene
  EAL91_RS04155 - 827869..828702 (-) 834 WP_121054209.1 outer membrane protein -
  EAL91_RS04160 purB 828767..830089 (-) 1323 WP_121054210.1 adenylosuccinate lyase -
  EAL91_RS04165 - 830199..831143 (-) 945 WP_000238158.1 thiamine pyrophosphate-dependent enzyme -
  EAL91_RS04170 - 831156..832379 (-) 1224 WP_121054211.1 2-oxoacid:ferredoxin oxidoreductase subunit alpha -
  EAL91_RS04175 - 832389..832781 (-) 393 WP_000656174.1 4Fe-4S dicluster domain-containing protein -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 75983.46 Da        Isoelectric Point: 6.7808

>NTDB_id=288032 EAL91_RS04150 WP_121054266.1 825882..827858(+) (uvrB) [Helicobacter pylori strain HP14039]
MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAKTNKPTLIMSHNKTLCAQLYSEFKAFF
PHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKI
KVGEKHAYKSFLLKLVEMGYSRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV
MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVCKGIENYARHFTGKAPNET
PFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNK
LELELSKKNVAEQIIRPTGLLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHS
EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRAARNANGKVLLYAKKIT
QSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNL
DFEEAMRLRDEIAQLRTL

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=288032 EAL91_RS04150 WP_121054266.1 825882..827858(+) (uvrB) [Helicobacter pylori strain HP14039]
ATGCCTTTATTTGATTTAAAAAGCCCTTATCCACCAGCAGGCGATCAGCCCCAAGCCATAGAAGCTTTAACAAAAAGCTT
AAAAAATAACAACCATTATCAAACTCTAGTGGGGGTTACAGGGAGCGGTAAGACTTACACGATGGCCAATATCATCGCCA
AAACCAATAAACCCACTTTGATCATGAGCCATAATAAGACCTTATGCGCGCAGCTTTATAGCGAGTTTAAGGCGTTTTTC
CCGCATAATAGGGTGGAGTATTTTATCTCCCACTTTGATTACTACCAGCCTGAAAGCTATATCCCTAGGAGGGATTTATT
CATTGAAAAAGACAGCTCTATTAACGATGATTTAGAGCGTTTGAGATTGAGCGCGACCACCTCGCTTTTAGGTTATGATG
ATGTGATCGTGATAGCGAGCGTTTCGGCTAATTATGGTTTGGGTAACCCTGAAGAATATTTAAAAGTTATGGAAAAAATC
AAAGTGGGCGAGAAGCACGCTTACAAGAGTTTTTTATTAAAGCTAGTGGAAATGGGTTATAGCCGTAATGAAGTGGTGTT
TGATAGGGGGAGCTTTAGAGCGACTGGGGAATGCGTGGATATTTTCCCCGCTTATAATGACGCTGAATTTATTAGGATTG
AATTTTTTGGCGATGAGATAGAAAGGATTGCGGTCTTTGATGCTTTAGAAAGAAATGAAATCAAGCGTTTGGATTCTGTC
ATGCTTTATGCGGCCAGTCAGTTTGCTGTAGGGAGCGAGAGGTTGAATTTAGCCATTAAAAGTATTGAAGATGAACTCGC
TCTAAGATTGAAATTTTTTAAAGAGCAGGATAAAATGCTTGAATACAACCGCCTCAAACAACGCACCGAGCATGATTTAG
AAATGATTAGTGCGACGGGTGTGTGTAAGGGCATTGAAAATTACGCGCGCCATTTCACCGGTAAAGCCCCTAACGAAACG
CCTTTTTGTTTGTTTGATTATTTAGGGATATTTGAGCGGGAGTTTTTAGTCATTGTAGATGAAAGCCATGTGAGTTTGCC
GCAATTTGGGGGGATGTATGCAGGGGATATGAGCAGGAAAAGCGTTTTAGTGGAATATGGTTTTAGATTGCCTAGCGCTT
TAGACAACCGCCCTTTAAAATTTGATGAATTTATCCATAAAAATTGCCAGTTCCTTTTTGTGTCCGCTACGCCCAATAAG
CTAGAATTAGAGCTTTCCAAAAAGAATGTCGCTGAGCAAATCATTCGCCCTACAGGGCTTTTAGACCCTAAATTTGAAGT
GCGAGACAGCGATAAACAAGTCCAAGATTTATTTGATGAAATCAAGCTAGTGGTGGCCAGAGATGAAAGGGTGCTAATCA
CCACGCTCACTAAAAAAATGGCAGAAGAATTGTGCAAATATTATGCTGAATGGGGCTTGAAAGCGCGTTACATGCATAGT
GAAATTGATGCGATTGAAAGAAATCACATCATCCGCTCTTTAAGGCTTAAAGAATTTGACATTTTAATAGGGATCAATCT
TTTAAGAGAAGGGCTGGATTTGCCTGAAGTCTCTTTAGTAGCGATCATGGATGCGGATAAAGAAGGGTTTTTAAGGAGCG
AAACAAGCCTCATTCAAACCATGGGGCGAGCCGCTAGAAACGCTAATGGCAAGGTTTTATTATACGCTAAAAAGATCACT
CAAAGCATGCAAAAAGCCTTTGAGATCACGAGTTACAGGCGTGCTAAGCAAGAAGAGTTCAATAAAATCCATAATATCAC
CCCTAAAACCGTTACTCGTGCTTTAGAAGAGGAATTGAAATTAAGAGACGATGAGATTAGAATCGCTAAAGCCTTAAAAA
AGGACAAAATGCCTAAAAGCGAAAGGGAAAAAATCATTAAAGAATTGGATAAAAAAATGCGAGAATGCGCGAAAAATTTG
GATTTTGAAGAAGCGATGCGTTTGAGAGACGAAATCGCTCAATTAAGAACGCTTTGA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(554-595)

UvrB interaction domain (UvrB_inter)

(159-248)

UvrB/uvrC motif (UVR)

(623-657)

Type III restriction enzyme, res subunit (ResIII)

(15-137)

Helicase conserved C-terminal domain (Helicase_C)

(445-547)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

49.774

100

0.502
  uvrB Streptococcus pneumoniae D39

49.774

100

0.502
  uvrB Streptococcus pneumoniae TIGR4

49.774

100

0.502

Multiple sequence alignment