Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   EIA51_RS11265 Genome accession   NZ_CP034110
Coordinates   2363593..2365590 (+) Length   665 a.a.
NCBI ID   WP_035686509.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain FARPER-174     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2358593..2370590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EIA51_RS11245 (EIA51_11245) - 2359246..2360232 (+) 987 WP_035686499.1 TRAP transporter substrate-binding protein -
  EIA51_RS11250 (EIA51_11250) - 2360294..2361763 (+) 1470 WP_035686501.1 FGGY-family carbohydrate kinase -
  EIA51_RS11255 (EIA51_11255) - 2361807..2362667 (+) 861 WP_035686504.1 L-ribulose-5-phosphate 3-epimerase -
  EIA51_RS11260 (EIA51_11260) araD 2362661..2363356 (+) 696 WP_035686507.1 L-ribulose-5-phosphate 4-epimerase -
  EIA51_RS11265 (EIA51_11265) recP/tkt 2363593..2365590 (+) 1998 WP_035686509.1 transketolase Machinery gene
  EIA51_RS11270 (EIA51_11270) - 2365839..2366489 (+) 651 WP_017806290.1 cell division ATP-binding protein FtsE -
  EIA51_RS11275 (EIA51_11275) ftsX 2366500..2367414 (+) 915 WP_035686512.1 permease-like cell division protein FtsX -
  EIA51_RS11280 (EIA51_11280) yggU 2367446..2367733 (-) 288 WP_017806288.1 DUF167 family protein YggU -
  EIA51_RS11285 (EIA51_11285) - 2367733..2368296 (-) 564 WP_017806287.1 YggT family protein -
  EIA51_RS11290 (EIA51_11290) corA 2368313..2369260 (-) 948 WP_017806286.1 magnesium/cobalt transporter CorA -

Sequence

Protein


Download         Length: 665 a.a.        Molecular weight: 72840.20 Da        Isoelectric Point: 5.3126

>NTDB_id=288008 EIA51_RS11265 WP_035686509.1 2363593..2365590(+) (recP/tkt) [Avibacterium paragallinarum strain FARPER-174]
MSNRKELANAIRFLSMDAVQKAKSGHPGAPMGMADIAEVLWREFLVHNPTNPKWANRDRFVLSNGHGSMLIYSLLHLTGY
DLSIEDLKQFRQLHSKTPGHPEYGYAPGVETTTGPLGQGITNAVGMAIAEKTLAAQFNRPGHEIIDHYTYAFLGDGCLME
GISHEACSLAGTLGLGKLIAFYDDNNISIDGEVDGWFTDNTKERFEAYNWQVIGQIDGHNPEAIAEAIKQAQAEKARPTL
IICKTTIGYGSPNKAGSHDSHGAPLGDEEIALTRQNLGWNYAPFEIPADIYSQWDAKEKGKQAEAVWNEKWTAYSQAYPE
LSAELARRLSGELPANWAAESQAFVEKLQANPASIASRKASQNAIEAYAPLLPEFLGGSADLAGSNLTLWSGSRPIRATE
NQDGNYINYGVREFGMSAIMNGIALHGGFIPYGATFLMFMEYAHNAVRMAALMKQRVLFVYTHDSIGLGEDGPTHQPVEQ
TASLRLIPNLETWRPCDQVESAVAWKAAVERKDGPSAMIFSRQNLTQMDRTPAQLADVARGGYILTDSEGTPDLIFIATG
SEVELVVKAAEQLRQEGKKIRVVSMPSTNVFDKQDEAYRESVLPSSVTKRVAVEAGISEFWYKYVGFGGRIVGMNTFGES
APAGELFKLFGFTVENVVAKAKEIL

Nucleotide


Download         Length: 1998 bp        

>NTDB_id=288008 EIA51_RS11265 WP_035686509.1 2363593..2365590(+) (recP/tkt) [Avibacterium paragallinarum strain FARPER-174]
ATGTCGAATCGAAAAGAGTTAGCGAATGCTATTCGTTTTTTAAGTATGGATGCGGTGCAAAAAGCCAAATCAGGCCACCC
TGGTGCACCAATGGGAATGGCGGACATTGCGGAAGTGTTGTGGCGTGAGTTTTTAGTGCATAATCCAACCAATCCAAAAT
GGGCAAACCGCGATAGATTCGTGTTATCAAATGGTCACGGTTCAATGTTGATTTACAGCCTTTTACATTTAACAGGCTAT
GATTTATCCATCGAAGATTTAAAACAATTCCGCCAATTACATTCTAAAACCCCAGGCCACCCTGAATATGGCTATGCACC
AGGTGTTGAAACTACCACGGGACCATTGGGTCAAGGGATCACCAACGCAGTAGGTATGGCGATTGCGGAGAAAACTCTCG
CGGCACAATTTAACCGTCCAGGTCACGAGATTATCGACCACTACACTTACGCTTTTTTAGGTGATGGCTGTTTAATGGAA
GGGATTTCCCACGAAGCTTGTTCCCTTGCGGGTACATTGGGCTTAGGCAAATTAATCGCGTTCTATGATGACAACAATAT
TTCTATTGATGGCGAAGTGGACGGCTGGTTTACCGATAACACAAAAGAGCGTTTTGAAGCCTATAACTGGCAAGTGATCG
GGCAAATTGACGGGCATAATCCAGAAGCCATTGCGGAAGCTATTAAACAAGCGCAAGCAGAAAAAGCGCGTCCAACCTTG
ATTATCTGTAAAACTACTATCGGCTATGGCTCGCCAAATAAAGCAGGCTCGCACGATAGTCACGGTGCGCCATTAGGCGA
TGAAGAAATCGCATTAACCCGCCAAAATCTTGGTTGGAACTACGCACCATTTGAAATTCCAGCGGACATTTATAGCCAAT
GGGACGCAAAAGAGAAAGGCAAACAAGCAGAAGCGGTGTGGAATGAAAAATGGACAGCATATAGCCAAGCTTATCCAGAA
TTAAGCGCAGAGCTTGCACGCCGTTTAAGTGGTGAATTACCCGCAAACTGGGCGGCAGAAAGCCAAGCATTTGTTGAAAA
ATTACAAGCCAACCCAGCGAGCATTGCAAGCCGTAAAGCCTCACAAAATGCCATTGAAGCCTATGCACCATTATTGCCAG
AGTTTTTAGGTGGTTCGGCAGATTTAGCTGGGTCAAACTTAACCTTATGGTCAGGCTCACGCCCTATTCGTGCCACAGAA
AATCAAGATGGTAACTACATCAACTACGGCGTGCGTGAATTTGGTATGTCTGCCATTATGAACGGAATTGCCTTACACGG
CGGCTTCATTCCTTATGGCGCAACCTTCTTAATGTTTATGGAATATGCTCATAATGCCGTGAGAATGGCGGCGTTAATGA
AACAACGTGTGCTTTTCGTGTACACCCACGATTCTATCGGCTTAGGGGAAGACGGCCCGACACATCAACCTGTGGAGCAA
ACAGCGTCATTACGTTTAATTCCAAATTTAGAAACGTGGCGTCCGTGTGACCAAGTGGAATCGGCGGTTGCGTGGAAAGC
GGCGGTTGAGCGTAAAGATGGCCCAAGTGCGATGATTTTCAGTCGTCAAAATCTTACTCAAATGGACAGAACCCCTGCGC
AATTGGCTGATGTGGCACGTGGTGGTTATATCTTAACCGATAGCGAAGGCACACCTGATTTAATCTTTATTGCGACAGGT
TCTGAAGTAGAATTAGTGGTGAAAGCGGCGGAGCAACTTCGTCAAGAAGGCAAAAAAATCCGTGTGGTATCAATGCCTTC
CACTAACGTGTTTGACAAACAAGATGAAGCTTACCGCGAAAGCGTATTGCCAAGCAGTGTAACCAAGCGTGTTGCAGTTG
AAGCGGGCATTAGCGAGTTCTGGTACAAATACGTTGGCTTCGGCGGACGCATTGTGGGAATGAACACCTTTGGTGAATCT
GCCCCAGCAGGTGAATTATTCAAACTATTTGGCTTCACCGTAGAAAACGTGGTGGCTAAAGCGAAAGAAATTTTATAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-526)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-334)

Transketolase, C-terminal domain (Transketolase_C)

(542-657)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.103

99.098

0.477

Multiple sequence alignment